Cancer Informatics

Nonlinear Optical Microscopy Signal Processing Strategies in Cancer (797 Views since 02 Apr 2014)

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INsPeCT: INtegrative Platform for Cancer Transcriptomics (1303 Views since 12 Mar 2014)

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A New Method for Predicting Patient Survivorship Using Efficient Bayesian Network Learning (1450 Views since 13 Feb 2014)

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Evaluating Gene Set Enrichment Analysis Via a Hybrid Data Model (1227 Views since 12 Feb 2014)

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Prognostic features of signal transducer and activator of transcription 3 in an ER(+) breast cancer model system (1593 Views since 21 Jan 2014)

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OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data (2295 Views since 16 Jan 2014)

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stepwiseCM: An R Package for Stepwise Classification of Cancer Samples Using Multiple Heterogeneous Data Sets (1589 Views since 02 Jan 2014)

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Are the Somatic Mutation and Tissue Organization Field Theories of Carcinogenesis Incompatible? (2111 Views since 01 Dec 2013)

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Gene Expression Meta-Analysis Identifies Cytokine Pathways and 5q Aberrations Involved in Metastasis of ERBB2 Amplified and Basal Breast Cancer (1816 Views since 25 Nov 2013)

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Monitoring of Technical Variation in Quantitative High-Throughput Datasets (2954 Views since 23 Sep 2013)

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Comprehensive Assessment and Network Analysis of the Emerging Genetic Susceptibility Landscape of Prostate Cancer (2629 Views since 28 Aug 2013)

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Analysis of Patterns of Gene Expression Variation within and between Ethnic Populations in Pediatric B-ALL (2687 Views since 27 Aug 2013)

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Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification (2694 Views since 04 Aug 2013)

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Novel Integrative Genomics Approach for Associating GWAS Information with Intrinsic Subtypes of Breast Cancer (3629 Views since 15 May 2013)

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Dealing with Diversity in Computational Cancer Modeling (4039 Views since 07 May 2013)

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Prognostic Estimator of Survival for Patients with Localized and Extended Pancreatic Ductal Adenocarcinoma (3329 Views since 18 Mar 2013)

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An Empirical Evaluation of Normalization Methods for MicroRNA Arrays in a Liposarcoma Study (3689 Views since 18 Mar 2013)

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Basic Equations and Computing Procedures for Frailty Modeling of Carcinogenesis: Application to Pancreatic Cancer Data (3221 Views since 18 Feb 2013)

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In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers (4980 Views since 13 Feb 2013)

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Classification of Tumor Samples from Expression Data Using Decision Trunks (3777 Views since 13 Feb 2013)

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Design of an Expert System for Mitigating Trace Element Toxicity in Cancer Risk Management (3878 Views since 04 Feb 2013)

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An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer (5034 Views since 29 Jan 2013)

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Prediction of Breast Cancer Metastasis by Gene Expression Profiles: A Comparison of Metagenes and Single Genes (5129 Views since 10 Dec 2012)

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Mapping the Future—Merging the Old with the New Across Disciplines (3629 Views since 26 Nov 2012)

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Newton, Laplace, and The Epistemology of Systems Biology (4557 Views since 30 Oct 2012)

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Significance Analysis of Microarrays (SAM) Offers Clues to Differences Between the Genomes of Adult Philadelphia Positive ALL and the Lymphoid Blast Transformation of CML (4385 Views since 12 Sep 2012)

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Haploinsufficiency of Tumor Suppressor Genes is Driven by the Cumulative Effect of microRNAs, microRNA Binding Site Polymorphisms and microRNA Polymorphisms: An In silico Approach (6665 Views since 29 Aug 2012)

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TNBCtype: A Subtyping Tool for Triple-Negative Breast Cancer (9821 Views since 24 Jul 2012)

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Identification of a Gene Expression Signature Common to Distinct Cancer Pathways (6039 Views since 08 May 2012)

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In Silico Prediction for Regulation of Transcription Factors onTheir Shared Target Genes Indicates Relevant Clinical Implications in a Breast Cancer Population (5446 Views since 19 Apr 2012)

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Major Functional Transcriptome of an Inferred Center Regulator of an ER(-) Breast Cancer Model System (5565 Views since 19 Apr 2012)

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Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots (4519 Views since 11 Apr 2012)

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Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature (9011 Views since 12 Mar 2012)

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A Systems Biology Approach in Therapeutic Response Study for Different Dosing Regimens—a Modeling Study of Drug Effects on Tumor Growth using Hybrid Systems (5533 Views since 27 Feb 2012)

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Gene Selection using a High-Dimensional Regression Model with Microarrays in Cancer Prognostic Studies (5455 Views since 27 Feb 2012)

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Evaluating Translocation Gene Fusions by SNP Array Data (7277 Views since 21 Dec 2011)

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Linear Discriminant Functions in Connection with the micro-RNA Diagnosis of Colon Cancer (7281 Views since 20 Dec 2011)

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Mouse 11β-Hydroxysteroid Dehydrogenase Type 2 for Human Application: Homology Modeling, Structural Analysis and Ligand-Receptor Interaction (5391 Views since 01 Dec 2011)

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Aberrant Signaling Pathways in Squamous Cell Lung Carcinoma (7777 Views since 21 Nov 2011)

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New Short Term Prediction Method for Chemical Carcinogenicity by Hepatic Transcript Profiling Following 28-Day Toxicity Tests in Rats (5218 Views since 27 Oct 2011)

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Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations (5278 Views since 19 Oct 2011)

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Mathematical Prognostic Biomarker Models for Treatment Response and Survival in Epithelial Ovarian Cancer (9138 Views since 03 Oct 2011)

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Cellular Imaging Using Equivalent Cross-Relaxation Rate Technique in Rabbit VX-2 Tumor Model (5788 Views since 31 Aug 2011)

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Multicenter Breast Cancer Collaborative Registry (7381 Views since 31 Aug 2011)

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On Differential Gene Expression Using RNA-Seq Data (11280 Views since 01 Aug 2011)

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An Integrative Genomics Approach to Biomarker Discovery in Breast Cancer (8243 Views since 25 Jul 2011)

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Metagenes Associated with Survival in Non-Small Cell Lung Cancer (7386 Views since 02 Jun 2011)

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Model-Integrated Estimation of Normal Tissue Contamination for Cancer SNP Allelic Copy Number Data (6207 Views since 25 May 2011)

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GENT: Gene Expression Database of Normal and Tumor Tissues (12137 Views since 09 May 2011)

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A Jackknife and Voting Classifier Approach to Feature Selection and Classification (6466 Views since 27 Apr 2011)

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Bioinformatic Prediction of Ultraviolet Light Mutagenesis Sensitivity of Human Genes and a Method for Genetically Engineering UVB Resistance (6518 Views since 18 Apr 2011)

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A Comparison of Methods for Data-Driven Cancer Outlier Discovery, and An Application Scheme to Semisupervised Predictive Biomarker Discovery (6942 Views since 18 Apr 2011)

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Associating GWAS Information with the Notch Signaling Pathway Using Transcription Profiling (8360 Views since 06 Apr 2011)

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PCCR: Pancreatic Cancer Collaborative Registry (8835 Views since 23 Mar 2011)

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Self-Calibrated Warping for Mass Spectra Alignment (6316 Views since 22 Mar 2011)

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Reproducibility of SELDI Spectra Across Time and Laboratories (6342 Views since 14 Mar 2011)

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Extension of Cox Proportional Hazard Model for Estimation of Interrelated Age-Period-Cohort Effects on Cancer Survival (6877 Views since 23 Feb 2011)

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In silico Analysis of Combinatorial microRNA Activity Reveals Target Genes and Pathways Associated with Breast Cancer Metastasis (9660 Views since 17 Feb 2011)

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Skin Cancer Recognition by Using a Neuro-Fuzzy System (12317 Views since 02 Feb 2011)

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Identification of Predictive Pathways for Non-Hodgkin Lymphoma Prognosis (7717 Views since 07 Dec 2010)

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Sinusoidal Cox Regression—A Rare Cancer Example (5508 Views since 28 Nov 2010)

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Cross-platform Comparison of Two Pancreatic Cancer Phenotypes (5828 Views since 01 Nov 2010)

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Blasted Cell Line Names (6640 Views since 14 Oct 2010)

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Estimating Shared Copy Number Aberrations for Array CGH Data: The Linear-Median Method (5615 Views since 12 Oct 2010)

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BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies (5872 Views since 29 Sep 2010)

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Heterogeneity Between Ducts of the Same Nuclear Grade Involved by Duct Carcinoma In Situ (DCIS) of the Breast (6010 Views since 07 Sep 2010)

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LTR: Linear Cross-Platform Integration of Microarray Data (5935 Views since 27 Aug 2010)

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Professional Networks in the Life Sciences: Linking the Linked (5344 Views since 25 Aug 2010)

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Weibull-like Model of Cancer Development in Aging (6770 Views since 24 Aug 2010)

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Inhibition of Antiapoptotic BCL-XL, BCL-2, and MCL-1 Proteins by Small Molecule Mimetics (8565 Views since 12 Aug 2010)

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Relationship between Selected Socio-Demographic Factors and Cancer of Oral Cavity - A Case Control Study (7033 Views since 11 Aug 2010)

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Clinical Omics Analysis of Colorectal Cancer Incorporating Copy Number Aberrations and Gene Expression Data (6866 Views since 29 Jul 2010)

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Rough Set Soft Computing Cancer Classification and Network: One Stone, Two Birds (6571 Views since 15 Jul 2010)

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Optimal Network Alignment with Graphlet Degree Vectors (8124 Views since 30 Jun 2010)

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An Efficient Gatekeeper Algorithm for Detecting GxE (5234 Views since 12 May 2010)

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Development and Validation of Predictive Indices for a Continuous Outcome Using Gene Expression Profiles (5761 Views since 07 May 2010)

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A Penalized Mixture Model Approach in Genotype/Phenotype Association Analysis for Quantitative Phenotypes (5883 Views since 27 Apr 2010)

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Genes with Relevance for Early to Late Progression of Colon Carcinoma Based on Combined Genomic and Transcriptomic Information from the Same Patients (6271 Views since 23 Apr 2010)

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Estimation of Hazard Functions in the Log-Linear Age-Period-Cohort Model: Application to Lung Cancer Risk Associated with Geographical Area (5701 Views since 14 Apr 2010)

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Protein-protein Interaction Reveals Synergistic Discrimination of Cancer Phenotype (7974 Views since 26 Mar 2010)

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Characterization of the Effectiveness of Reporting Lists of Small Feature Sets Relative to the Accuracy of the Prior Biological Knowledge (5832 Views since 18 Mar 2010)

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Comparison of Two Output-Coding Strategies for Multi-Class Tumor Classification Using Gene Expression Data and Latent Variable Model as Binary Classifier (6705 Views since 10 Mar 2010)

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Expression a La Bimode (4942 Views since 03 Mar 2010)

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The Power of the Web in Cancer Drug Discovery and Clinical Trial Design: Research without a Laboratory? (6515 Views since 18 Feb 2010)

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Bimodal Gene Expression and Biomarker Discovery (6857 Views since 04 Feb 2010)

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A Robust Gene Selection Method for Microarray-based Cancer Classification (7942 Views since 04 Feb 2010)

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Dual KS: Defining Gene Sets with Tissue Set Enrichment Analysis (7448 Views since 21 Jan 2010)

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Modeling Prognostic Factors in Resectable Pancreatic Adenocarcinomas (6091 Views since 20 Jan 2010)

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A Novel Approach for Analysis of the Log-Linear Age-Period-Cohort Model: Application to Lung Cancer Incidence (6417 Views since 14 Dec 2009)

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In silico Analysis of Human Telomerase Reverse Transcriptase (hTERT ) Gene: Identification of a Distant Homolog of Melanoma Antigen Family Gene (MAGE) (7199 Views since 24 Nov 2009)

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Discrimination of Carcinogens by Hepatic Transcript Profiling in Rats Following 28-day Administration (5533 Views since 13 Nov 2009)

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Introduction of Hypermatrix and Operator Notation into a Discrete Mathematics Simulation Model of Malignant Tumour Response to Therapeutic Schemes In Vivo. Some Operator Properties (6375 Views since 21 Oct 2009)

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Unblocking Blockbusters: Using Boolean Text-Mining to Optimise Clinical Trial Design and Timeline for Novel Anticancer Drugs (7224 Views since 17 Aug 2009)

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New Advanced Technologies to Provide Decentralised  and Secure Access to Medical Records: Case Studies  in Oncology (7698 Views since 07 Aug 2009)

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The Bimodality Index: A Criterion for Discovering  and Ranking Bimodal Signatures from Cancer Gene Expression Profiling Data (10808 Views since 05 Aug 2009)

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A Generalized Beta Model for the Age Distribution of Cancers: Application to Pancreatic and Kidney Cancer (5967 Views since 04 Aug 2009)

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Linguistic Processing and Classification of Semi Structured Bibliographic Data on Complementary Medicine (5866 Views since 06 Jul 2009)

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Robust Model Selection for Classification of Microarrays (7964 Views since 25 Jun 2009)

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Integration of Neuroimaging and Microarray Datasets  through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes (6539 Views since 08 Jun 2009)

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Microarray-Based Cancer Prediction Using Soft Computing Approach (8691 Views since 26 May 2009)

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Using Semantic Web Technologies to Annotate and Align Microarray Designs (7495 Views since 13 May 2009)

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Estrogen Exposure, Metabolism, and Enzyme Variants in a Model for Breast Cancer Risk Prediction (7551 Views since 05 May 2009)

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Dedication: Joan Elaine Althouse Weiler (4787 Views since 30 Apr 2009)

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Development of the Lymphoma Enterprise Architecture Database: A caBIG(TM) Silver Level Compliant System (8127 Views since 03 Apr 2009)

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Combining Chromosomal Arm Status and Significantly Aberrant Genomic Locations Reveals New Cancer Subtypes (7753 Views since 12 Mar 2009)

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An Algorithm for Identifying Novel Targets of Transcription Factor Families: Application to Hypoxia-inducible Factor 1 Targets (6102 Views since 04 Mar 2009)

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Use of Gene Expression Profiles of Peripheral Blood Lymphocytes to Distinguish BRCA1 Mutation Carriers in High Risk Breast Cancer Families (8513 Views since 02 Mar 2009)

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A Novel Information Retrieval Model for High-Throughput Molecular Medicine Modalities (5926 Views since 09 Feb 2009)

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Staging of Prostate Cancer Using Automatic Feature Selection, Sampling and Dempster-Shafer Fusion (5819 Views since 03 Feb 2009)

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Semantic Integration of Cervical Cancer Data Repositories to Facilitate Multicenter Association Studies: The ASSIST Approach (6459 Views since 03 Feb 2009)

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Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data (6248 Views since 15 Jan 2009)

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Quantitative Assessment of Tissue Biomarkers and Construction of a Model to Predict Outcome in Breast Cancer Using Multiple Imputation (6387 Views since 23 Dec 2008)

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Applications of Microarray Technology to Acute Myelogenous Leukemia (9390 Views since 22 Dec 2008)

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Simulation of Different Truncated p16INK4a Forms and In Silico Study of Interaction with Cdk4 (6602 Views since 03 Dec 2008)

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Modeling and Analyzing Gene Co-Expression in Hepatocellular Carcinoma Using Actor-Semiotic Networks and Centrality Signatures (5631 Views since 05 Nov 2008)

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An Analysis Pipeline for Genome-wide Association Studies (6762 Views since 24 Sep 2008)

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Algorithmic Discovery of Methylation “Hot Spots” in DNA from Lymphoma Patients (5548 Views since 04 Sep 2008)

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Grammatical Immune System Evolution for Reverse Engineering Nonlinear Dynamic Bayesian Models (5555 Views since 28 Aug 2008)

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What Does PLIER Really Do? (4312 Views since 27 Aug 2008)

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Efficiency Analysis of Competing Tests for Finding Differentially Expressed Genes in Lung Adenocarcinoma (6617 Views since 14 Jul 2008)

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A Biological Evaluation of Six Gene Set Analysis Methods for Identification of Differentially Expressed Pathways in Microarray Data (6433 Views since 20 Jun 2008)

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An Integrative Analysis of microRNA and mRNA Expression - A Case Study (9461 Views since 17 Jun 2008)

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The Anti-tumour Agent, Cisplatin, and its Clinically Ineffective Isomer, Transplatin, Produce Unique Gene Expression Profiles in Human Cells (6577 Views since 10 Jun 2008)

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Non-Negative Matrix Factorization for the Analysis of Complex Gene Expression Data: Identification of Clinically Relevant Tumor Subtypes (7744 Views since 29 May 2008)

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Detecting Role Errors in the Gene Hierarchy of the NCI Thesaurus (4838 Views since 27 May 2008)

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An Analysis of Risk Factors for Developing Hepatocellular Carcinoma in a Group of Hepatitis C Patients with Stage 3 Fibrosis following Interferon Therapy (4642 Views since 23 Apr 2008)

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Connections Between ETV6-Modulated Genes: Identification of Shared Features (6278 Views since 21 Apr 2008)

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BRB-ArrayTools Data Archive for Human Cancer Gene Expression: A Unique and Efficient Data Sharing Resource (6515 Views since 21 Apr 2008)

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Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios (9705 Views since 18 Apr 2008)

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Comparison of a Label-Free Quantitative Proteomic Method Based on Peptide Ion Current Area to the Isotope Coded Affinity Tag Method (9319 Views since 17 Apr 2008)

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Uncovering Biological Network Function via Graphlet Degree Signatures (7276 Views since 14 Apr 2008)

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Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios (5871 Views since 11 Apr 2008)

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A Standards based Ontological Approach to Information Handling for use by Organizations Providing Human Tissue for Research (4210 Views since 10 Apr 2008)

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Sample Preparation for in vitro Analysis of Iodine in Thyroid Tissue using X-ray Fluorescence (5352 Views since 10 Apr 2008)

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An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis (4090 Views since 10 Apr 2008)

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MCAM: A Database to Accelerate the Identification of Functional Cell Adhesion Molecules (6189 Views since 31 Mar 2008)

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Comparisons of Robustness and Sensitivity between Cancer and Normal Cells by Microarray Data (6062 Views since 28 Mar 2008)

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DNA Copy Number Analysis in Gastrointestinal Stromal Tumors Using Gene Expression Microarrays (7057 Views since 27 Mar 2008)

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Chromosome 20q Amplification Regulates in Vitro Response to Kinesin-5 Inhibitor (7310 Views since 26 Mar 2008)

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A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis (4989 Views since 12 Mar 2008)

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Effect of Quantitative Nuclear Image Features on Recurrence of Ductal Carcinoma In Situ (DCIS) of the Breast (6998 Views since 01 Mar 2008)

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Evaluating Microarray-based Classifiers: An Overview (9037 Views since 29 Feb 2008)

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Estimating the Proportion of True Null Hypotheses for Multiple Comparisons (5978 Views since 14 Feb 2008)

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Bayesian Estimation of Performance Measures of Cervical Cancer Screening Tests in the Presence of Covariates and Absence of a Gold Standard (5572 Views since 14 Feb 2008)

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Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study (6825 Views since 09 Feb 2008)

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Constructing Tumor Progression Pathways and Biomarker Discovery with Fuzzy Kernel Kmeans and DNA Methylation Data (3883 Views since 25 Jan 2008)

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Estimating the False Discovery Rate Using Mixed Normal Distribution for Identifying Differentially Expressed Genes in Microarray Data Analysis (6356 Views since 22 Jan 2008)

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A Practical Multifaceted Approach to Selecting Differentially Expressed Genes (4846 Views since 15 Jan 2008)

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Common Peak Approach Using Mass Spectrometry Data Sets for Predicting the Effects of Anticancer Drugs on Breast Cancer (5844 Views)

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Germinal Center B Cell-Like (GCB) and Activated B Cell-Like (ABC) Type of Diffuse Large B Cell Lymphoma (DLBCL): Analysis of Molecular Predictors, Signatures, Cell Cycle State and Patient Survival (11136 Views)

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