Results 1-50 of 562 for Genomics

Sequence Analysis and Evolutionary Studies of Reelin Proteins
Malini Manoharan, Sayyed Auwn Muhammad, and Ramanathan Sowdhamini
Bioinformatics and Biology Insights 2015:9 187-193
Original Research | Published on 20 Dec 2015

Phylogeny Inference of Closely Related Bacterial Genomes: Combining the Features of Both Overlapping Genes and Collinear Genomic Regions
Yan-Cong Zhang and Kui Lin
Evolutionary Bioinformatics 2015:Suppl. 2 1-9
Original Research | Published on 17 Dec 2015

Molecular Profiling of Refractory Adrenocortical Cancers and Predictive Biomarkers to Therapy
Sherri Z. Millis, Samuel Ejadi and Michael J. Demeure
Biomarkers in Cancer 2015:7 69-76
Original Research | Published on 17 Dec 2015

Differential Expression Analysis for RNA-Seq: An Overview of Statistical Methods and Computational Software
Huei-Chung Huang, Yi Niu, and Li-Xuan Qin
Cancer Informatics 2015:Suppl. 1 57-67
Review | Published on 13 Dec 2015

The Impact of Age and Sex in DLBCL: Systems Biology Analyses Identify Distinct Molecular Changes and Signaling Networks
Afshin Beheshti, Donna Neuberg, J. Tyson McDonald, Charles R. Vanderburg and Andrew M. Evens
Cancer Informatics 2015:14 141-148
Rapid Communication | Published on 10 Dec 2015

Efficacy of Dasatinib in a CML Patient in Blast Crisis with F317L Mutation: A Case Report and Literature Review
E.V. Morozova, Y.Y. Vlasova, M.V. Pryanishnikova, K.V. Lepik and B.V. Afanasyev
Biomarker Insights 2015:Suppl. 3 43-47
Review | Published on 08 Dec 2015

Single-Nucleotide Mutations in FMR1 Reveal Novel Functions and Regulatory Mechanisms of the Fragile X Syndrome Protein FMRP
Joshua A. Suhl and Stephen T. Warren
Journal of Experimental Neuroscience 2015:Suppl. 2 35-41
Review | Published on 08 Dec 2015

A Computational Pipeline for Cross-Species Analysis of RNA-seq Data Using R and Bioconductor
Peter R. LoVerso and Feng Cui
Bioinformatics and Biology Insights 2015:9 165-174
Original Research | Published on 02 Dec 2015

Aberrant Splicing of Estrogen Receptor, HER2, and CD44 Genes in Breast Cancer
Kazushi Inoue and Elizabeth A. Fry
Genetics & Epigenetics 2015:7 19-32
Review | Published on 02 Dec 2015

Discovering All Transcriptome Single-Nucleotide Polymorphisms and Scanning for Selection Signatures in Ducks (Anas platyrhynchos)
Ruiyi Lin, Xiaoyong Du, Sixue Peng, Liubin Yang, Yunlong Ma, Yanzhang Gong and Shijun Li
Evolutionary Bioinformatics 2015:Suppl. 1 67-76
Original Research | Published on 01 Dec 2015

SUMAC: Constructing Phylogenetic Supermatrices and Assessing Partially Decisive Taxon Coverage
William A. Freyman
Evolutionary Bioinformatics 2015:11 263-266
Technical Advance | Published on 30 Nov 2015

Segmenting the Human Genome into Isochores
Paolo Cozzi, Luciano Milanesi and Giorgio Bernardi
Evolutionary Bioinformatics 2015:11 253-261
Methodology | Published on 25 Nov 2015

Characterizing Cancer-Specific Networks by Integrating TCGA Data
Yanxun Xu, Yitan Zhu, Peter Müller, Riten Mitra and Yuan Ji
Cancer Informatics 2014:Suppl. 2 125-131
Methodology | Published on 23 Nov 2015

c-Met as a Target for Personalized Therapy
Ingrid Garajová, Elisa Giovannetti, Guido Biasco and Godefridus J. Peters
Translational Oncogenomics 2015:Suppl. 1 13-31
Review | Published on 23 Nov 2015

Multivariate Boosting for Integrative Analysis of High-Dimensional Cancer Genomic Data
Lie Xiong, Pei-Fen Kuan, Jianan Tian, Sunduz Keles, and Sijian Wang
Cancer Informatics 2014:Suppl. 7 123-131
Methodology | Published on 15 Nov 2015

Precision Medicine for Molecularly Targeted Agents and Immunotherapies in Early-Phase Clinical Trials
Juanita Lopez, Sam Harris, Desam Roda and Timothy A. Yap
Translational Oncogenomics 2015:Suppl. 1 1-11
Review | Published on 15 Nov 2015

Advanced Applications of RNA Sequencing and Challenges
Yixing Han, Shouguo Gao, Kathrin Muegge, Wei Zhang and Bing Zhou
Bioinformatics and Biology Insights 2015:Suppl. 1 29-46
Review | Published on 15 Nov 2015

Using Disease-Associated Coding Sequence Variation to Investigate Functional Compensation by Human Paralogous Proteins
Sayaka Miura, Stephanie Tate and Sudhir Kumar
Evolutionary Bioinformatics 2015:11 245-251
Original Research | Published on 02 Nov 2015

Immunohistochemical Markers of Soft Tissue Tumors: Pathologic Diagnosis, Genetic Contributions, and Therapeutic Options
David M. Parham
Analytical Chemistry Insights 2015:Suppl. 1 1-10
Review | Published on 29 Oct 2015

Effectiveness and Usability of Bioinformatics Tools to Analyze Pathways Associated with miRNA Expression
Lila E. Mullany, Roger K. Wolff and Martha L. Slattery
Cancer Informatics 2015:14 121-130
Original Research | Published on 29 Oct 2015

Screening of Transcription Factors Involved in Fetal Hemoglobin Regulation Using Phylogenetic Footprinting
Gisele Cristine de Souza Carrocini, Larissa Paola Rodrigues Venancio and Claudia Regina Bonini-Domingos
Evolutionary Bioinformatics 2015:11 239-244
Original Research | Published on 27 Oct 2015

Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability
Brian L. Gudenas and Liangjiang Wang
Bioinformatics and Biology Insights 2015:Suppl. 1 21-27
Original Research | Published on 27 Oct 2015

Genetically Targeted Dipeptidyl Peptidase-4 Inhibitor Use in a Patient with a Novel Mutation of MODY type 4
Christian Mangrum, Eric Rush and Vijay Shivaswamy
Clinical Medicine Insights: Endocrinology and Diabetes 2015:8 83-86
Case report | Published on 27 Oct 2015

Paternal Transmission of Small Supernumerary Marker Chromosome 15 Identified in Prenatal Diagnosis Due to Advanced Maternal Age
Bruna C. S. Melo, Ana Portocarrero, Cláudia Alves, André Sampaio and Luisa Mota-Vieira
Clinical Medicine Insights: Case Reports 2015:8 93-96
Case report | Published on 26 Oct 2015

In Silico Gene Regulatory Network of the Maurer’s Cleft Pathway in Plasmodium falciparum
Itunuoluwa Isewon, Jelili Oyelade, Benedikt Brors and Ezekiel Adebiyi
Evolutionary Bioinformatics 2015:11 231-238
Original Research | Published on 22 Oct 2015

Application of Functional Genomics for Bovine Respiratory Disease Diagnostics
Aswathy N. Rai, William B. Epperson and Bindu Nanduri
Bioinformatics and Biology Insights 2015:Suppl. 2 13-23
Review | Published on 22 Oct 2015

Applying Side-chain Flexibility in Motifs for Protein Docking
Hui Liu, Feng Lin, Jian-Li Yang, Hong-Rui Wang and Xiu-Ling Liu
Genomics Insights 2015:8 1-10
Original Research | Published on 15 Oct 2015

Phylogenetic Trees and Networks Reduce to Phylogenies on Binary States: Does It Furnish an Explanation to the Robustness of Phylogenetic Trees against Lateral Transfers?
Marc Thuillard and Didier Fraix-Burnet
Evolutionary Bioinformatics 2015:11 213-221
Original Research | Published on 13 Oct 2015

FXYD5 is a Marker for Poor Prognosis and a Potential Driver for Metastasis in Ovarian Carcinomas
Pichai Raman, Timothy Purwin, Richard Pestell and Aydin Tozeren
Cancer Informatics 2015:14 113-119
Short Report | Published on 12 Oct 2015

Molecular Assay and Genotyping of Hepatitis C Virus among Infected Egyptian and Saudi Arabian Patients
Mohamed M.S. Farag, Ahmed R. Sofy, Adel A. Mousa, Mohamed A. Ahmed and Mohamed R. Alganzory
Virology: Research and Treatment 2015:6 1-10
Original Research | Published on 12 Oct 2015

The Genetic Architecture of Domestication in Animals
Dominic Wright
Bioinformatics and Biology Insights 2015:Suppl. 4 11-20
Commentary | Published on 11 Oct 2015

Interstitial Lung Disease in Childhood: Clinical and Genetic Aspects
Hiroshi Kitazawa and Shigeo Kure
Clinical Medicine Insights: Circulatory, Respiratory and Pulmonary Medicine 2015:Suppl. 1 57-68
Review | Published on 11 Oct 2015

Csf2 and Ptgs2 Epigenetic Dysregulation in Diabetes-prone Bicongenic B6.NODC11bxC1tb Mice
Erin Garrigan, Nicole S. Belkin, Federica Seydel, Zhao Han, Jamal Carter, Marcia McDuffie, Laurence Morel, Ammon B. Peck, Michael J. Clare-Salzler, Mark Atkinson, Clive Wasserfall, Abdoreza Davoodi-Semiromi, Jing-da Shi, Carrie Haskell-Luevano, Li-Jun Yang, John J. Alexander, Autumn Cdebaca, Teresa Piliant, Corin Riggs, Matthew Amick and Sally A. Litherland
Genetics & Epigenetics 2015:7 5-17
Original Research | Published on 11 Oct 2015

B-Cell and Monocyte Contribution to Systemic Lupus Erythematosus Identified by Cell-Type-Specific Differential Expression Analysis in RNA-Seq Data
Mikhail G. Dozmorov, Nicolas Dominguez, Krista Bean, Susan R. Macwana, Virginia Roberts, Edmund Glass, Judith A. James and Joel M. Guthridge
Bioinformatics and Biology Insights 2015:Suppl. 3 11-19
Original Research | Published on 08 Oct 2015

Genomics and Evolution in Traditional Medicinal Plants: Road to a Healthier Life
Da-Cheng Hao and Pei-Gen Xiao
Evolutionary Bioinformatics 2015:11 197-212
Review | Published on 04 Oct 2015

Genetics of Prion Disease in Cattle
Brenda M. Murdoch and Gordon K. Murdoch
Bioinformatics and Biology Insights 2015:Suppl. 4 1-10
Review | Published on 24 Sep 2015

The Widening Gulf between Genomics Data Generation and Consumption: A Practical Guide to Big Data Transfer Technology
Frank A. Feltus, Joseph R. Breen III, Juan Deng, Ryan S. Izard, Christopher A. Konger, Walter B. Ligon III, Don Preuss and Kuang-Ching Wang
Bioinformatics and Biology Insights 2015:Suppl. 1 9-19
Review | Published on 23 Sep 2015 | Video abstract

Phenotypic and Genotypic Characteristics of Small Colony Variants and Their Role in Chronic Infection
Benjamin E. Johns, Kevin J. Purdy, Nicholas P. Tucker and Sarah E. Maddocks
Microbiology Insights 2015:8 15-23
Review | Published on 22 Sep 2015

TIN: An R Package for Transcriptome Instability Analysis
Bjarne Johannessen, Anita Sveen, and Rolf I. Skotheim
Cancer Informatics 2015:14 109-112
Software or database review | Published on 20 Sep 2015

Aberrant Expression of Cyclin D1 in Cancer
Kazushi Inoue and Elizabeth A. Fry
Signal Transduction Insights 2015:4 1-13
Review | Published on 20 Sep 2015

Distribution of Angiotensin-1 Converting Enzyme Insertion/Deletion and α-Actinin-3 Codon 577 Polymorphisms in Turkish Male Soccer Players
Korkut Ulucan, Canan Sercan and Türker Biyikli
Genetics & Epigenetics 2015:7 1-4
Original Research | Published on 20 Sep 2015

Alview: Portable Software for Viewing Sequence Reads in BAM Formatted Files
Richard P. Finney, Qing-Rong Chen, Cu V. Nguyen, Chih Hao Hsu, Chunhua Yan, Ying Hu, Massih Abawi, Xiaopeng Bian and Daoud M. Meerzaman
Cancer Informatics 2015:14 105-107
Software or database review | Published on 13 Sep 2015

Expression Divergence of Duplicate Genes in the Protein Kinase Superfamily in Pacific Oyster
Dahai Gao, Dennis C. Ko, Xinmin Tian, Guang Yang and Liuyang Wang
Evolutionary Bioinformatics 2015:Suppl. 1 57-65
Review | Published on 13 Sep 2015

Molecular Dynamics Approach in the Comparison of Wild-Type and Mutant Paraoxonase-1 Apoenzyme Form
Khadija Amine, Lamia Miri, Adil Naimi, Rachid Saile, Abderrahmane El Kharrim, Afaf Mikou and Anass Kettani
Bioinformatics and Biology Insights 2015:9 129-140
Original Research | Published on 13 Sep 2015

An Application of Sequential Meta-Analysis to Gene Expression Studies
Putri W. Novianti, Ingeborg van der Tweel, Victor L. Jong, Kit C. B. Roes and Marinus J. C. Eijkemans
Cancer Informatics 2015:Suppl. 5 1-10
Methodology | Published on 10 Sep 2015

tRNA-Derived Short Non-coding RNA as Interacting Partners of Argonaute Proteins
Megumi Shigematsu and Yohei Kirino
Gene Regulation and Systems Biology 2015:9 27-33
Review | Published on 10 Sep 2015

Genomic, Proteomic, and Metabolomic Data Integration Strategies
Kwanjeera Wanichthanarak, Johannes F. Fahrmann and Dmitry Grapov
Biomarker Insights 2015:Suppl. 4 1-6
Review | Published on 07 Sep 2015 | Editor in Chief endorsed

BRAF Mutation in Colorectal Cancer: An Update
David Barras
Biomarkers in Cancer 2015:Suppl. 1 9-12
Review | Published on 06 Sep 2015

In Silico Characterization of Functional Divergence of Two Cathelicidin Variants in Indian Sheep
Kamaljeet K. Dhaliwal, Jaspreet S. Arora, Chandra S. Mukhopadhyay and Prem P. Dubey
Evolutionary Bioinformatics 2015:11 189-196
Published on 01 Sep 2015

Mutations in Breast Cancer Exome Sequences Predict Susceptibility to Infections and Converge on the Same Signaling Pathways
Bernard Friedenson
Journal of Genomes and Exomes 2015:4 1-28
Original Research | Published on 26 Aug 2015