Results 200-250 of 526 for Genomics

A Novel Variant in the STAT3 Gene Associated with Autoimmune Enteropathy in a Father–Son Duo
Voytek Slowik, Darrell L. Dinwiddie, Christina E. Ciaccio, Lei Shao, Carol J. Saunders, Jon A. Vanderhoof, Stephen F. Kingsmore and Seth Septer
Journal of Genomes and Exomes 2014:3 1-5
Case report | Published on 26 Feb 2014

Genome-wide Identification and Characterization of Transcription Factor Binding Motifs of NBS-LRR Genes in Rice and Arabidopsis
Gandhimani Ramkumar, Maganti S. Madhav, Akshaya K. Biswal, S.J.S. Rama Devi, Kannabiran Sakthivel, Madhan K. Mohan, B. Umakanth, Satendra K. Mangrauthia, Raman M. Sundaram and Basavaraj C. Viraktamath
Journal of Genomes and Exomes 2014:3 7-15
Original Research | Published on 26 Feb 2014

Phylogenetic Relationships of Some Filamentous Cyanoprokaryotic Species
Plamen Stoyanov, Dzhemal Moten, Rumen Mladenov, Balik Dzhambazov and Ivanka Teneva
Evolutionary Bioinformatics 2014:10 39-49
Original Research | Published on 23 Feb 2014

Impact of Gender in Renal Cell Carcinoma: The Relationship of FABP7 and BRN2 Expression with Overall Survival
Cheng Tan, Tatsuya Takayama, Naohisa Takaoka, Hiromi Fujita, Miki Miyazaki, Takayuki Sugiyama and Seiichiro Ozono
Clinical Medicine Insights: Oncology 2014:8 21-27
Original Research | Published on 23 Feb 2014

Discovery of Emphysema Relevant Molecular Networks from an A/J Mouse Inhalation Study Using Reverse Engineering and Forward Simulation (REFS™)
Yang Xiang, Ulrike Kogel, Stephan Gebel, Michael J. Peck, Manuel C. Peitsch, Viatcheslav R. Akmaev and Julia Hoeng
Gene Regulation and Systems Biology 2014:8 45-61
Original Research | Published on 19 Feb 2014

Postpartal Subclinical Endometritis Alters Transcriptome Profiles in Liver and Adipose Tissue of Dairy Cows
Haji Akbar, Felipe C. Cardoso, Susanne Meier, Christopher Burke, Scott McDougall, Murray Mitchell, Caroline Walker, Sandra L. Rodriguez-Zas, Robin E. Everts, Harris A. Lewin, John R. Roche and Juan J. Loor
Bioinformatics and Biology Insights 2014:8 45-63
Original Research | Published on 19 Feb 2014

Folate Levels and Polymorphisms in the Genes MTHFR, MTR, and TS in Colorectal Cancer
Helena Taflin, Yvonne Wettergren, Elisabeth Odin, Göran Carlsson and Kristoffer Derwinger
Clinical Medicine Insights: Oncology 2014:8 15-20
Original Research | Published on 17 Feb 2014

The Stochastic Evolutionary Game for a Population of Biological Networks Under Natural Selection
Bor-Sen Chen and Shih-Ju Ho
Evolutionary Bioinformatics 2014:10 17-38
Original Research | Published on 16 Feb 2014

Probing the Unknowns in Cytokinin-Mediated Immune Defense in Arabidopsis with Systems Biology Approaches
Muhammad Naseem, Meik Kunz and Thomas Dandekar
Bioinformatics and Biology Insights 2014:8 35-44
Methodology | Published on 13 Feb 2014

Regulation of Ku70-Bax Complex in Cells
Manila Hada and Roland P.S. Kwok
Journal of Cell Death 2014:7 11-13
Perspective | Published on 13 Feb 2014

Evaluating Gene Set Enrichment Analysis Via a Hybrid Data Model
Jianping Hua, Michael L. Bittner and Edward R. Dougherty
Cancer Informatics 2014:13(S1)1-16
Original Research | Published on 12 Feb 2014

Netmes: Assessing Gene Network Inference Algorithms by Network-Based Measures
Gökmen Altay, Zeyneb Kurt, Matthias Dehmer and Frank Emmert-Streib
Evolutionary Bioinformatics 2014:10 1-9
Original Research | Published on 06 Feb 2014

Longitudinal Analysis of Whole Blood Transcriptomes to Explore Molecular Signatures Associated With Acute Renal Allograft Rejection
Heesun Shin, Oliver Günther, Zsuzsanna Hollander, Janet E. Wilson-McManus, Raymond T. Ng, Robert Balshaw, Paul A. Keown, Robert McMaster, Bruce M. McManus, Nicole M. Isbel, Greg Knoll and Scott J. Tebbutt; for the PROOF Centre of Excellence Team
Bioinformatics and Biology Insights 2014:8 17-33
Original Research | Published on 22 Jan 2014

Gene Expression and Gene Ontology Enrichment Analysis for H3K4me3 and H3K4me1 in Mouse Liver and Mouse Embryonic Stem Cell Using ChIP-Seq and RNA-Seq
Ngoc Tam L. Tran and Chun-Hsi Huang
Gene Regulation and Systems Biology 2014:8 33-43
Original Research | Published on 20 Jan 2014

OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data
Ying Hu, Chunhua Yan, Chih-Hao Hsu, Qing-Rong Chen, Kelvin Niu, George A. Komatsoulis and Daoud Meerzaman
Cancer Informatics 2014:13 13-20
Technical Advance | Published on 16 Jan 2014

Oncotype Dx Results in Multiple Primary Breast Cancers
Michael J. Toole, Kelley M. Kidwell and Catherine Van Poznak
Breast Cancer: Basic and Clinical Research 2014:8 1-6
Original Research | Published on 09 Jan 2014

Central Role of the PPARγ Gene Network in Coordinating Beef Cattle Intramuscular Adipogenesis in Response to Weaning Age and Nutrition
Sonia J. Moisá, Daniel W. Shike, Dan B. Faulkner, William T. Meteer, Duane Keisler and Juan J. Loor
Gene Regulation and Systems Biology 2014:8 17-32
Original Research | Published on 08 Jan 2014

GeneSV – an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences
Adam Zemla, Tanya Kostova, Rodion Gorchakov, Evgeniya Volkova, David W. C. Beasley, Jane Cardosa, Scott C. Weaver, Nikos Vasilakis and Pejman Naraghi-Arani
Bioinformatics and Biology Insights 2014:8 1-16
Original Research | Published on 08 Jan 2014

Innate Immunity Interactome Dynamics
Asmaa Elzawahry, Ashwini Patil, Yutaro Kumagai, Yutaka Suzuki and Kenta Nakai
Gene Regulation and Systems Biology 2014:8 1-15
Original Research | Published on 06 Jan 2014

Oocyte-Somatic Cell Interactions and Ovulation Rate: Effects on Oocyte Quality and Embryo Yield
Kenneth P. McNatty, Jennifer L. Juengel and Janet L. Pitman
Reproductive Biology Insights 2014:7 1-8
Review | Published on 02 Jan 2014

Stimulation of Hepatic Apolipoprotein A-I Production by Novel Thieno-Triazolodiazepines: Roles of the Classical Benzodiazepine Receptor, PAF Receptor, and Bromodomain Binding
Herman J. Kempen, Daniel Bellus, Oleg Fedorov, Silke Nicklisch, Panagis Filippakopoulos, Sarah Picaud and Stefan Knapp
Lipid Insights 2013:6 47-54
Rapid Communication | Published on 22 Dec 2013

A Comprehensive Phylogenetic Analysis of Deadenylases
Athanasia Pavlopoulou, Dimitrios Vlachakis, Nikolaos A.A. Balatsos and Sophia Kossida
Evolutionary Bioinformatics 2013:9 491-497
Original Research | Published on 02 Dec 2013

Are the Somatic Mutation and Tissue Organization Field Theories of Carcinogenesis Incompatible?
Simon Rosenfeld
Cancer Informatics 2013:12 221-229
Debate | Published on 01 Dec 2013

ChIP-Seq Data Mining: Remarkable Differences in NRSF/REST Target Genes between Human ESC and ESC-Derived Neurons
Jun-ichi Satoh, Natsuki Kawana and Yoji Yamamoto
Bioinformatics and Biology Insights 2013:7 357-368
Original Research | Published on 01 Dec 2013

Gene Expression Meta-Analysis Identifies Cytokine Pathways and 5q Aberrations Involved in Metastasis of ERBB2 Amplified and Basal Breast Cancer
Mads Thomassen, Qihua Tan, Mark Burton and Torben A. Kruse
Cancer Informatics 2013:12 203-219
Original Research | Published on 25 Nov 2013

EASER: Ensembl Easy Sequence Retriever
Emanuel Maldonado, Imran Khan, Siby Philip, Vítor Vasconcelos and Agostinho Antunes
Evolutionary Bioinformatics 2013:9 487-490
Technical Advance | Published on 24 Nov 2013

Grouped False-Discovery Rate for Removing the Gene-Set-Level Bias of RNA-seq
Tae Young Yang and Seongmun Jeong
Evolutionary Bioinformatics 2013:9 467-478
Methodology | Published on 13 Nov 2013

The Origin of Parasitism Gene in Nematodes: Evolutionary Analysis Through the Construction of Domain Trees
Yizi Yang and Damin Luo
Evolutionary Bioinformatics 2013:9 453-466
Original Research | Published on 06 Nov 2013

Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases
Jun-ichi Satoh, Natsuki Kawana and Yoji Yamamoto
Gene Regulation and Systems Biology 2013:7 139-152
Original Research | Published on 04 Nov 2013

Identification of New Aquaporin Genes and Single Nucleotide Polymorphism in Bread Wheat
B. Pandey, P. Sharma, D.M. Pandey, I. Sharma and R. Chatrath
Evolutionary Bioinformatics 2013:9 437-452
Original Research | Published on 03 Nov 2013

Gene Expression Profiling for the Purposes of Biomarker Discovery in Oral Potentially Malignant Lesions: A Systematic Review
Ahmad A. AbdulMajeed and Camile S. Farah
Clinical Medicine Insights: Oncology 2013:7 279-290
Review | Published on 31 Oct 2013

PhyloTreePruner: A Phylogenetic Tree-Based Approach for Selection of Orthologous Sequences for Phylogenomics
Kevin M. Kocot, Mathew R. Citarella, Leonid L. Moroz and Kenneth M. Halanych
Evolutionary Bioinformatics 2013:9 429-435
Methodology | Published on 29 Oct 2013

Epigenetics of Autoantigens: New Opportunities for Therapy of Autoimmune Diseases
Marko Radic and Sylviane Muller
Genetics & Epigenetics 2013:5 63-70
Review | Published on 29 Oct 2013

Molecular Profiling for Breast Cancer: A Comprehensive Review
Muaiad Kittaneh, Alberto J. Montero and Stefan Glück
Biomarkers in Cancer 2013:5 61-70
Review | Published on 29 Oct 2013

Changes in Methylation Patterns of Kiss1 and Kiss1r Gene Promoters Across Puberty
Amanda K. Wyatt, Monika Zavodna, Jean L. Viljoen, Jo-Ann L. Stanton, Neil J. Gemmell and Christine L. Jasoni
Genetics & Epigenetics 2013:5 51-62
Original Research | Published on 24 Oct 2013 | Video abstract

Human Retrovirus Codon Usage from tRNA Point of View: Therapeutic Insights
Diego Frias, Joana P. Monteiro-Cunha, Aline C. Mota-Miranda, Vagner S. Fonseca, Tulio de Oliveira, Bernardo Galvao-Castro, and Luiz C. J. Alcantara
Bioinformatics and Biology Insights 2013:7 335-345
Original Research | Published on 10 Oct 2013

Analysis of New Functional Profiles of Protein Isoforms Yielded by Ds Exonization in Rice
Ting-Ying Chien, Li-yu Daisy Liu, and Yuh-Chyang Charng
Evolutionary Bioinformatics 2013:9 417-427
Original Research | Published on 09 Oct 2013 | Video abstract

Molecular Mechanisms at the Basis of Plasticity in the Developing Visual Cortex: Epigenetic Processes and Gene Programs
José Fernando Maya-Vetencourt and Tommaso Pizzorusso
Journal of Experimental Neuroscience 2013:7 75-83
Review | Published on 09 Oct 2013

Susceptibility to Cutaneous Squamous Cell Carcinoma in Renal Transplant Recipients Associates with Genes Regulating Melanogenesis Independent of their Role in Pigmentation
Per A. Andresen, Dag A. Nymoen, Kristina Kjærheim, Torbjørn Leivestad and Per Helsing
Biomarkers in Cancer 2013:5 41-47
Original Research | Published on 07 Oct 2013

Identification, Nomenclature, and Evolutionary Relationships of Mitogen-Activated Protein Kinase (MAPK) Genes in Soybean
Achal Neupane, Madhav P. Nepal, Sarbottam Piya, Senthil Subramanian, Jai S. Rohila, R. Neil Reese and Benjamin V. Benson
Evolutionary Bioinformatics 2013:9 363-386
Original Research | Published on 22 Sep 2013

Molecular Insights on Post-chemotherapy Retinoblastoma by Microarray Gene Expression Analysis
Venkatesan Nalini, Ramya Segu, Perinkulam Ravi Deepa, Vikas Khetan, Madavan Vasudevan and Subramanian Krishnakumar
Bioinformatics and Biology Insights 2013:7 289-306
Original Research | Published on 18 Sep 2013

Atrial Natriuretic Peptide Single Nucleotide Polymorphisms in Patients with Nonfamilial Structural Atrial Fibrillation
Pietro Francia, Agnese Ricotta, Alessandra Frattari, Rosita Stanzione, Anna Modestino, Federico Mercanti, Carmen Adduci, Isabella Sensini, Maria Cotugno, Cristina Balla, Speranza Rubattu, and Massimo Volpe
Clinical Medicine Insights: Cardiology 2013:7 153-159
Original Research | Published on 15 Sep 2013

Live Birth from Previously Vitrified Oocytes, After Trophectoderm Biopsy, Revitrification, and Transfer of a Euploid Blastocyst
Jamie A. Grifo, Brooke Hodes-Wertz, Hsiao Ling Lee, Esmeralda Ampeloquio, Melicia Clarke-Williams, Alexis Adler, Santiago Munné and Alan S. Berkeley
Clinical Medicine Insights: Reproductive Health 2013:7 79-82
Case report | Published on 10 Sep 2013

POPBAM: Tools for Evolutionary Analysis of Short Read Sequence Alignments
Daniel Garrigan
Evolutionary Bioinformatics 2013:9 343-353
Technical Advance | Published on 01 Sep 2013

SBEToolbox: A Matlab Toolbox for Biological Network Analysis
Kranti Konganti, Gang Wang, Ence Yang and James J. Cai
Evolutionary Bioinformatics 2013:9 355-362
Software or database review | Published on 01 Sep 2013

Hsp60 Chaperonin Acts as Barrier to Pharmacologically Induced Oxidative Stress Mediated Apoptosis in Tumor Cells with Differential Stress Response
Upasana Sarangi, Manish Kumar Singh, Kanugovi Vijaya Vittal Abhijnya, Lebaka Prasanna Anjaneya Reddy, Badabagni Siva Prasad, Vikrant Vinay Pitke, Khanderao Paithankar and Amere Subbarao Sreedhar
Drug Target Insights 2013:7 35-51
Original Research | Published on 01 Sep 2013

Comprehensive Assessment and Network Analysis of the Emerging Genetic Susceptibility Landscape of Prostate Cancer
Chindo Hicks, Lucio Miele, Tejaswi Koganti and Srinivasan Vijayakumar
Cancer Informatics 2013:12 175-191
Original Research | Published on 28 Aug 2013

Analysis of Patterns of Gene Expression Variation within and between Ethnic Populations in Pediatric B-ALL
Chindo Hicks, Lucio Miele, Tejaswi Koganti, LaFarra Young-Gaylor, Deidre Rogers, Vani Vijayakumar and Gail Megason
Cancer Informatics 2013:12 155-173
Original Research | Published on 27 Aug 2013

Comparative Genomics of Bacillus Species and its Relevance in Industrial Microbiology
Archana Sharma and T. Satyanarayana
Genomics Insights 2013:6 25-36
Review | Published on 18 Aug 2013

Conventional Simulation of Biological Sequences Leads to a Biased Assessment of Multi-Loci Phylogenetic Analysis
Barbara O. Aguiar and Carlos G. Schrago
Evolutionary Bioinformatics 2013:9 317-325
Original Research | Published on 13 Aug 2013