Results 150-200 of 525 for Genomics

Functional Annotation of Putative Regulatory Elements at Cancer Susceptibility Loci
Stephanie A. Rosse, Paul L. Auer, and Christopher S. Carlson
Cancer Informatics 2014:Suppl. 2 5-17
Review | Published on 21 Sep 2014

A Review of Cancer Risk Prediction Models with Genetic Variants
Xuexia Wang, Michael J. Oldani, Xingwang Zhao, Xiaohui Huang and Dajun Qian
Cancer Informatics 2014:Suppl. 2 19-28
Review | Published on 21 Sep 2014

A Bayesian Integrative Model for Genetical Genomics with Spatially Informed Variable Selection
Alberto Cassese, Michele Guindani and Marina Vannucci
Cancer Informatics 2014:Suppl. 2 29-37
Original Research | Published on 21 Sep 2014

Integrative Bayesian Network Analysis of Genomic Data
Yang Ni, Francesco C. Stingo and Veerabhadran Baladandayuthapani
Cancer Informatics 2014:Suppl. 2 39-48
Original Research | Published on 21 Sep 2014

Integrated Analysis of Whole-Genome Paired-End and Mate-Pair Sequencing Data for Identifying Genomic Structural Variations in Multiple Myeloma
Rendong Yang, Li Chen, Scott Newman, Khanjan Gandhi, Gregory Doho, Carlos S. Moreno, Paula M. Vertino, Leon Bernal-Mizarchi, Sagar Lonial, Lawrence H. Boise, Michael Rossi, Jeanne Kowalski, and Zhaohui S. Qin
Cancer Informatics 2014:Suppl. 2 49-53
Review | Published on 21 Sep 2014

Comparative Study of Computational Methods for Reconstructing Genetic Networks of Cancer-Related Pathways
Nafiseh Sedaghat, Takumi Saegusa, Timothy Randolph and Ali Shojaie
Cancer Informatics 2014:Suppl. 2 55-66
Review | Published on 21 Sep 2014

Review of Current Methods, Applications, and Data Management for the Bioinformatics Analysis of Whole Exome Sequencing
Riyue Bao, Lei Huang, Jorge Andrade, Wei Tan, Warren A. Kibbe, Hongmei Jiang and Gang Feng
Cancer Informatics 2014:Suppl. 2 67-82
Review | Published on 21 Sep 2014

Distal Deletion of Chromosome 11q Encompassing Jacobsen Syndrome without Platelet Abnormality
Frenny J. Sheth, Chaitanya Datar, Joris Andrieux, Anand Pandit, Darshana Nayak, Mizanur Rahman and Jayesh J. Sheth
Clinical Medicine Insights: Pediatrics 2014:8 45-49
Case report | Published on 17 Sep 2014

Maternal Stress, Preterm Birth, and DNA Methylation at Imprint Regulatory Sequences in Humans
Adriana C. Vidal, Sara E. Benjamin Neelon, Ying Liu, Abbas M. Tuli, Bernard F. Fuemmeler, Cathrine Hoyo, Amy P. Murtha, Zhiqing Huang, Joellen Schildkraut, Francine Overcash, Joanne Kurtzberg, Randy L. Jirtle, Edwin S. Iversen, and Susan K. Murphy
Genetics & Epigenetics 2014:6 37-44
Original Research | Published on 14 Sep 2014

Interactions Among Plant Transcription Factors Regulating Expression of Stress-responsive Genes
Sony Malhotra and R. Sowdhamini
Bioinformatics and Biology Insights 2014:8 193-198
Original Research | Published on 10 Sep 2014

Integrated Analysis of Dysregulated miRNA-gene Expression in HMGA2-silenced Retinoblastoma Cells
Nalini Venkatesan, PR Deepa, Madavan Vasudevan, Vikas Khetan, Ashwin M Reddy and Subramanian Krishnakumar
Bioinformatics and Biology Insights 2014:8 177-191
Original Research | Published on 04 Sep 2014

Reassessment of the Genome Size in Elaeis guineensis and Elaeis oleifera, and Its Interspecific Hybrid
Julceia Camillo, André P. Leão, Alexandre A. Alves, Eduardo F. Formighieri, Ana L.S. Azevedo, Juliana D. Nunes, Guy de Capdeville, Jean K. de A. Mattos and Manoel T. Souza Jr.
Genomics Insights 2014:7 13-22
Original Research | Published on 03 Sep 2014

Identification of Gene Signatures Used to Recognize Biological Characteristics of Gastric Cancer Upon Gene Expression Data
Zhi Yan, Brian T. Luke, Shirley X. Tsang, Rui Xing, Yuanming Pan, Yixuan Liu, Jinlian Wang, Tao Geng, Jiangeng Li and Youyong Lu
Biomarker Insights 2014:9 67-76
Original Research | Published on 14 Aug 2014

Computational Identification of Dengue Virus MicroRNA-Like Structures and their Cellular Targets
Maicol Ospina-Bedoya, Natalia Campillo-Pedroza, Juan P. Franco-Salazar and Juan C. Gallego-Gómez
Bioinformatics and Biology Insights 2014:8 169-176
Short Report | Published on 14 Aug 2014

HLA-A, -B, -C, -DRB1, and -DQB1 Allele Lineages and Haplotype Frequencies among Saudis
Awad E. Osman, Faviel F. Gonzalez-Galarza, Mohamed Mubasher, Hanan Al-Harthi, Nezar Eltayeb ElSheikh, Noureddine Berka, Derek Middleton and Gehad ElGhazali
Immunology and Immunogenetics Insights 2014:6 1-6
Original Research | Published on 12 Aug 2014

The Low Prevalence of Y Chromosomal Microdeletions is Observed in the Oligozoospermic Men in the Area of Mato Grosso State and Amazonian Region of Brazilian Patients
Gleice Cristina dos Santos Godoy, Bianca Borsatto Galera, Claudinéia Araujo, Jacklyne Silva Barbosa, Max Fernando de Pinho, Marcial Francis Galera and Sebastião Freitas de Medeiros
Clinical Medicine Insights: Reproductive Health 2014:8 51-57
Original Research | Published on 11 Aug 2014

iteRates: An R Package for Implementing a Parametric Rate Comparison on Phylogenetic Trees
James A. Fordyce, Premal Shah and Benjamin M. Fitzpatrick
Evolutionary Bioinformatics 2014:10 127-130
Rapid Communication | Published on 03 Aug 2014

An In-depth Analysis of a Multilocus Phylogeny Identifies leuS As a Reliable Phylogenetic Marker for the Genus Pantoea
James T. Tambong, Renlin Xu, Cynthia-Anne Kaneza and Jean-Claude Nshogozabahizi
Evolutionary Bioinformatics 2014:10 115-125
Original Research | Published on 27 Jul 2014

Copy Number Variation of TLR-7 Gene and its Association with the Development of Systemic Lupus Erythematosus in Female Patients from Yucatan Mexico
Guillermo Valencia Pacheco, Darig Cámara Cruz, Lizbeth J. González Herrera, Gerardo J. Pérez Mendoza, Guadalupe I. Adrián Amaro, Yumi E. Nakazawa Ueji and Angélica V. Angulo Ramírez
Genetics & Epigenetics 2014:6 31-36
Original Research | Published on 22 Jul 2014

Regulation of Human PAX6 Expression by miR-7
Maria Needhamsen, Robert B. White, Keith M. Giles, Sarah A. Dunlop and Meghan G. Thomas
Evolutionary Bioinformatics 2014:10 107-113
Original Research | Published on 14 Jul 2014

Q192R Paraoxonase (PON)1 Polymorphism, Insulin Sensitivity, and Endothelial Function in Essential Hypertensive Men
Giulia Dell’Omo, Giuseppe Penno, Laura Pucci, Daniela Lucchesi, Stefano Del Prato and Roberto Pedrinelli
Clinical Medicine Insights: Cardiology 2014:8 57-62
Original Research | Published on 14 Jul 2014

Vanishing White Matter Disease in a Spanish Population
Eulàlia Turón-Viñas, Mercè Pineda, Victòria Cusí, Eduardo López-Laso, Rebeca Losada del Pozo, Luis González Gutiérrez-Solana, David Conejo Moreno, Concha Sierra-Córcoles, Naiara Olabarrieta-Hoyos, Marcos Madruga-Garrido, Javier Aguirre-Rodríguez, Verónica González-Álvarez, Mar O’Callaghan, Jordi Muchart and Judith Armstrong-Moron
Journal of Central Nervous System Disease 2014:6 59-68
Short Review | Published on 13 Jul 2014

DNA Methylation at the Novel CpG Sites in the Promoter of MED15/PCQAP Gene as a Biomarker for Head and Neck Cancers
Dmitry A. Ovchinnikov, Yunxia Wan, William B. Coman, Pratibala Pandit, Justin J. Cooper-White, James G. Herman and Chamindie Punyadeera
Biomarker Insights 2014:9 53-60
Original Research | Published on 03 Jul 2014 | Video abstract

Integrative Genomic Analysis for the Discovery of Biomarkers in Prostate Cancer
Chindo Hicks, Tejaswi Koganti, Shankar Giri, Memory Tekere, Ritika Ramani, Jitsuda Sitthi-Amorn and Srinivasan Vijayakumar
Biomarker Insights 2014:9 39-51
Original Research | Published on 29 Jun 2014

Application of Machine Learning to Development of Copy Number Variation-based Prediction of Cancer Risk
Xiaofan Ding, Shui-Ying Tsang, Siu-Kin Ng and Hong Xue
Genomics Insights 2014:7 1-11
Original Research | Published on 26 Jun 2014

In Silico Studies of Medicinal Compounds Against Hepatitis C Capsid Protein from North India
Shilu Mathew, Muhammad Faheem, Govindaraju Archunan, Muhammad Ilyas, Nargis Begum, Syed Jahangir, Ishtiaq Qadri, Mohammad Al Qahtani and Shiny Mathew
Bioinformatics and Biology Insights 2014:8 159-168
Original Research | Published on 23 Jun 2014

Identification of Chicken Pulmonary miRNAs Targeting PB1, PB1-F2, and N40 Genes of Highly Pathogenic Avian Influenza Virus H5N1 In Silico
Amod Kumar, Muhasin Asaf V.N., Ashwin Ashok Raut, Richa Sood and Anamika Mishra
Bioinformatics and Biology Insights 2014:8 135-145
Original Research | Published on 12 Jun 2014

DOR – a Database of Olfactory Receptors – Integrated Repository for Sequence and Secondary Structural Information of Olfactory Receptors in Selected Eukaryotic Genomes
Balasubramanian Nagarathnam, Snehal D. Karpe, Krishnan Harini, Kannan Sankar, Mohammed Iftekhar, Durairaj Rajesh, Sadasivam Giji, Govidaraju Archunan, Veluchamy Balakrishnan, M. Michael Gromiha, Wataru Nemoto, Kazhuhiko Fukui and Ramanathan Sowdhamini
Bioinformatics and Biology Insights 2014:8 147-158
Original Research | Published on 12 Jun 2014

A Protocol for mtGenome Analysis on Large Sample Numbers
Igor G. Hamoy, André M. Ribeiro-dos-Santos, Luiz Alvarez, Silvanira Barbosa, Artur Silva, Sidney Santos, Leonor Gusmão and Ândrea Ribeiro-dos-Santos
Bioinformatics and Biology Insights 2014:8 127-134
Original Research | Published on 11 Jun 2014

Effect of FTO Gene and Physical Activity Interaction on Trunk Fat Percentage Among the Newfoundland Population
Anthony Payne, Farrell Cahill, Guang Sun, J Concepciόn Loredo-Osti and Taraneh Abarin
Genetics & Epigenetics 2014:6 21-30
Original Research | Published on 11 Jun 2014

Expression of Glycosyltransferases; ST3GAL1, FUT3, FUT5, and FUT6 Transcripts in Oral Cancer
Bhairavi N. Vajaria, Kinjal R. Patel, Rasheedunnisa Begum, Franky D. Shah, Jayendra B. Patel, Geeta M. Joshi and Prabhudas S. Patel
Glycobiology Insights 2014:4 7-14
Original Research | Published on 09 Jun 2014

Hexadecyltrimethylammonium Bromide (CTAB)-based Protocol to Isolate High-Quality RNA in Adequate Quantities for Gene Expression Analyses in Developing Seeds of Lentils (Lens culinaris Medik.)
Udhaya Kannan, Seedhabadee Ganeshan and Ravindra N. Chibbar
Gene Expression to Genetical Genomics 2014:7 7-16
Methodology | Published on 05 Jun 2014

Modeling the Altered Expression Levels of Genes on Signaling Pathways in Tumors As Causal Bayesian Networks
Richard Neapolitan, Diyang Xue, and Xia Jiang
Cancer Informatics 2014:13 77-84
Original Research | Published on 25 May 2014

Endothelin-1 but not Endothelial Nitric Oxide Synthase Gene Polymorphism is Associated with Sickle Cell Disease in Africa
Tanya J. Thakur, Aldiouma Guindo, Londyn R. Cullifer, Yi Li, Ikhide G. Imumorin, Dapa A. Diallo and Bolaji N. Thomas
Gene Regulation and Systems Biology 2014:8 119-126
Original Research | Published on 25 May 2014

Recent Advances in Studying of Copy Number Variation and Gene Expression
George E. Liu, Lingyang Xu and Kevin S. Huang
Gene Expression to Genetical Genomics 2014:7 1-5
Review | Published on 25 May 2014

The Purine Bias of Coding Sequences is Determined by Physicochemical Constraints on Proteins
Miguel Ponce de Leon, Antonio Basilio de Miranda, Fernando Alvarez-Valin and Nicolas Carels
Bioinformatics and Biology Insights 2014:8 93-108
Original Research | Published on 20 May 2014

Human Prenatal Small Intestine Cells as a Valuable Source of Stem Cells and Epithelial Cells: Phenotypic and Functional Characterization
Rami Nasrallah, Toai Nguyen, Anasua Kusari, Kelly Burgee and Rafael Gonzalez
Cell & Tissue Transplantation & Therapy 2014:6 1-9
Original Research | Published on 14 May 2014

Species-Specific Regulation of t-PA and PAI-1 Gene Expression in Human and Rat Astrocytes
Anna Tjärnlund-Wolf, Karin Hultman, Fredrik Blomstrand, Michael Nilsson, Robert L. Medcalf and Christina Jern
Gene Regulation and Systems Biology 2014:8 113-118
Short Report | Published on 08 May 2014

Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates
Beatriz Mello and Carlos G. Schrago
Evolutionary Bioinformatics 2014:10 79-85
Original Research | Published on 07 May 2014

Current View of miRNA with Tumor Suppressor Function, Exploring MDS and AML as Models
Nicholas Iverson, Naomi Galili, Abdullah M. Ali and Azra Raza
Signal Transduction Insights 2014:3 1-10
Review | Published on 28 Apr 2014

A Multistep Screening Method to Identify Genes Using Evolutionary Transcriptome of Plants
Chang-Kug Kim, Hye-Min Lim, Jong-Kuk Na, Ji-Weon Choi, Seong-Han Sohn, Soo-Chul Park, Young-Hwan Kim, Yong-Kab Kim and Dool-Yi Kim
Evolutionary Bioinformatics 2014:10 69-78
Original Research | Published on 21 Apr 2014

Lack of Association between Polymorphisms of Hepatic Lipase with Lipid Profile in Young Jordanian Adults
Omar F. Khabour, Mahmoud A. Alomari, Karem H. Alzoubi, Mohammad Y. Gharaibeh and Farah H. Alhashimi
Lipid Insights 2014:7 1-5
Original Research | Published on 21 Apr 2014

Overfeeding Dairy Cattle During Late-Pregnancy Alters Hepatic PPARα-Regulated Pathways Including Hepatokines: Impact on Metabolism and Peripheral Insulin Sensitivity
M. Jawad Khan, Carolina B. Jacometo, Daniel E. Graugnard, Marcio N. Corrêa, Eduardo Schmitt, Felipe Cardoso and Juan J. Loor
Gene Regulation and Systems Biology 2014:8 97-111
Original Research | Published on 03 Apr 2014

Host Cell Reactivation and Transcriptional Activation of Carboplatin-Modified BRCA1
Adisorn Ratanaphan and Bhutorn Canyuk
Breast Cancer: Basic and Clinical Research 2014:8 51-56
Short Report | Published on 23 Mar 2014

Bioinformatic Dissecting of TP53 Regulation Pathway Underlying Butyrate-induced Histone Modification in Epigenetic Regulation
Cong-Jun Li and Robert W. Li
Genetics & Epigenetics 2014:6 1-7
Original Research | Published on 17 Mar 2014

Novel PI3K and mTOR Inhibitor NVP-BEZ235 Radiosensitizes Breast Cancer Cell Lines under Normoxic and Hypoxic Conditions
Sebastian Kuger, Emre Cörek, Bülent Polat, Ulrike Kämmerer, Michael Flentje and Cholpon S. Djuzenova
Breast Cancer: Basic and Clinical Research 2014:8 39-49
Original Research | Published on 16 Mar 2014

INsPeCT: INtegrative Platform for Cancer Transcriptomics
Piyush B. Madhamshettiwar, Stefan R. Maetschke, Melissa J. Davis, Antonio Reverter and Mark A. Ragan
Cancer Informatics 2014:13 59-66
Original Research | Published on 12 Mar 2014

DNA Conformational Transitions Induced by Supercoiling Control Transcription in Chromatin
Andrey N. Luchnik
Gene Regulation and Systems Biology 2014:8 89-96
Consise Review | Published on 12 Mar 2014 | Video abstract

Tissue-Specific Gene Expression and Regulation in Liver and Muscle Following Chronic Corticosteroid Administration
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois, Siddharth Sukumaran, William J. Jusko, and Ioannis P. Androulakis
Gene Regulation and Systems Biology 2014:8 75-87
Methodology | Published on 10 Mar 2014

A Novel Variant in the STAT3 Gene Associated with Autoimmune Enteropathy in a Father–Son Duo
Voytek Slowik, Darrell L. Dinwiddie, Christina E. Ciaccio, Lei Shao, Carol J. Saunders, Jon A. Vanderhoof, Stephen F. Kingsmore and Seth Septer
Journal of Genomes and Exomes 2014:3 1-5
Case report | Published on 26 Feb 2014