Results 100-150 of 525 for Genomics

ordinalgmifs: An R Package for Ordinal Regression in High-dimensional Data Settings
Kellie J. Archer, Jiayi Hou, Qing Zhou, Kyle Ferber, John G. Layne and Amanda E. Gentry
Cancer Informatics 2014:13 187-195
Methodology | Published on 10 Dec 2014

Functional Implications of RNA Splicing for Human Long Intergenic Noncoding RNAs
Feng-Chi Chen, Chia-Lin Pan and Hsuan-Yu Lin
Evolutionary Bioinformatics 2014:10 219-228
Original Research | Published on 10 Dec 2014

Normal Cell-Type Epigenetics and Breast Cancer Classification: A Case Study of Cell Mixture–Adjusted Analysis of DNA Methylation Data from Tumors
Eugene Andrés Houseman and Tan A. Ince
Cancer Informatics 2014:Suppl. 4 53-64
Review | Published on 09 Dec 2014

CARAT-GxG: CUDA-Accelerated Regression Analysis Toolkit for Large-Scale Gene–Gene Interaction with GPU Computing System
Sungyoung Lee, Min-Seok Kwon and Taesung Park
Cancer Informatics 2014:Suppl. 7 27-33
Review | Published on 09 Dec 2014

Genome-wide Analysis of Mycoplasma hominis for the Identification of Putative Therapeutic Targets
Md. Masud Parvege, Monzilur Rahman and Mohammad Shahnoor Hossain
Drug Target Insights 2014:8 51-62
Original Research | Published on 09 Dec 2014

A Comprehensive Profile of ChIP-Seq-Based PU.1/Spi1 Target Genes in Microglia
Jun-ichi Satoh, Naohiro Asahina, Shouta Kitano and Yoshihiro Kino
Gene Regulation and Systems Biology 2014:8 127-139
Original Research | Published on 08 Dec 2014

A Role for the Cavin-3/Matrix Metalloproteinase-9 Signaling Axis in the Regulation of PMA-Activated Human HT1080 Fibrosarcoma Cell Neoplastic Phenotype
Chirine Toufaily, Cyndia Charfi, Bayader Annabi and Borhane Annabi
Cancer Growth and Metastasis 2014:7 43-51
Original Research | Published on 08 Dec 2014

Bayesian Joint Selection of Genes and Pathways: Applications in Multiple Myeloma Genomics
Lin Zhang, Jeffrey S. Morris, Jiexin Zhang, Robert Z. Orlowski and Veerabhadran Baladandayuthapani
Cancer Informatics 2014:Suppl. 2 113-123
Methodology | Published on 07 Dec 2014

Evaluating the Accuracy and Efficiency of Multiple Sequence Alignment Methods
Muhammad Tariq Pervez, Masroor Ellahi Babar, Asif Nadeem, Muhammad Aslam, Ali Raza Awan, Naeem Aslam, Tanveer Hussain, Nasir Naveed, Salman Qadri, Usman Waheed and Muhammad Shoaib
Evolutionary Bioinformatics 2014:10 205-217
Original Research | Published on 07 Dec 2014

The Use of Pharmacogenomics for Selection of Therapy in Non-Small-Cell Lung Cancer
Nagla A. Karim, Hai Bui, Peterson Pathrose, Sandra Starnes, Ninad Patil, Mahmoud Shehata, Ahmed Mostafa, MB Rao, Ahmad Zarzour and Marshall Anderson
Clinical Medicine Insights: Oncology 2014:8 139-144
Original Research | Published on 07 Dec 2014

Allele and Genotype Distributions of DNA Repair Gene Polymorphisms in South Indian Healthy Population
Katiboina Srinivasa Rao, Abialbon Paul, Annan Sudarsan Arun Kumar, Gurusamy Umamaheswaran, Biswajit Dubashi, Karunanithi Gunaseelan and Steven Aibor Dkhar
Biomarkers in Cancer 2014:6 29-35
Original Research | Published on 07 Dec 2014

A Pan-Cancer Analysis of Alternative Splicing Events Reveals Novel Tumor-Associated Splice Variants of Matriptase
Daryanaz Dargahi, Richard D. Swayze, Leanna Yee, Peter J. Bergqvist, Bradley J. Hedberg, Alireza Heravi-Moussavi, Edie M. Dullaghan, Ryan Dercho, Jianghong An, John S. Babcook, and Steven J.M. Jones
Cancer Informatics 2014:13 167-177
Original Research | Published on 04 Dec 2014

Evidence for the Influence of the Iron Regulatory MHC Class I Molecule HFE on Tumor Progression in Experimental Models and Clinical Populations
Cody Weston and James Connor
Translational Oncogenomics 2014:6 1-12
Review | Published on 04 Dec 2014

Streamlined Genome Sequence Compression using Distributed Source Coding
Shuang Wang, Xiaoqian Jiang, Feng Chen, Lijuan Cui and Samuel Cheng
Cancer Informatics 2014:Suppl. 1 123-131
Review | Published on 02 Dec 2014

SWAMP: Sliding Window Alignment Masker for PAML
Peter W. Harrison, Gregory E. Jordan and Stephen H. Montgomery
Evolutionary Bioinformatics 2014:10 197-204
Technical Advance | Published on 01 Dec 2014

Genetic Diversity and Allelic Frequency of Glutamate-Rich Protein (GLURP) in Plasmodium falciparum Isolates from Sub-Saharan Africa
Kimberley C. Duru and Bolaji N. Thomas
Microbiology Insights 2014:7 35-39
Short Report | Published on 20 Nov 2014

A Bayesian Framework to Improve MicroRNA Target Prediction by Incorporating External Information
Zixing Wang, Wenlong Xu, Haifeng Zhu and Yin Liu
Cancer Informatics 2014:Suppl. 7 19-25
Review | Published on 18 Nov 2014

Evaluative Profiling of Arsenic Sensing and Regulatory Systems in the Human Microbiome Project Genomes
Raphael D. Isokpehi, Udensi K. Udensi, Shaneka S. Simmons, Antoinesha L. Hollman, Antia E. Cain, Samson A. Olofinsae, Oluwabukola A. Hassan, Zainab A. Kashim, Ojochenemi A. Enejoh, Deborah E. Fasesan and Oyekanmi Nashiru
Microbiology Insights 2014:7 25-34
Original Research | Published on 11 Nov 2014

Cellular Responses to Cytosolic Double-stranded RNA—The Role of the Inflammasome
Adi Idris
Immunology and Immunogenetics Insights 2014:6 7-11
Consise Review | Published on 09 Nov 2014

In Silico Prediction of Synthetic Lethality by Meta-Analysis of Genetic Interactions, Functions, and Pathways in Yeast and Human Cancer
Min Wu, Xuejuan Li, Fan Zhang, Xiaoli Li, Chee-Keong Kwoh and Jie Zheng
Cancer Informatics 2014:Suppl. 3 71-80
Review | Published on 05 Nov 2014

A Novel Subset of Human Tumors That Simultaneously Overexpress Multiple E2F-responsive Genes Found in Breast, Ovarian, and Prostate Cancers
Stanley E. Shackney, Salim Akhter Chowdhury and Russell Schwartz
Cancer Informatics 2014:Suppl. 5 89-100
Original Research | Published on 03 Nov 2014

Propensity Score Method for Partially Matched Omics Studies
Pei-Fen Kuan
Cancer Informatics 2014:Suppl. 7 1-10
Review | Published on 29 Oct 2014

Learning Dysregulated Pathways in Cancers from Differential Variability Analysis
Bahman Afsari, Donald Geman and Elana J. Fertig
Cancer Informatics 2014:Suppl. 5 61-67
Review | Published on 23 Oct 2014

Cloning and Expression Profiling of the Polycomb Gene, Retinoblastoma-related Protein from Tomato Solanum lycopersicum L.
Zainab M. Almutairi and Monther T. Sadder
Evolutionary Bioinformatics 2014:10 177-185
Original Research | Published on 23 Oct 2014

Comparative Study on Sequence–Structure–Function Relationship of the Human Short-chain Dehydrogenases/Reductases Protein Family
Nu Thi Ngoc Tang and Ly Le
Evolutionary Bioinformatics 2014:10 165-176
Original Research | Published on 21 Oct 2014

Co-expression Network Analysis of Human lncRNAs and Cancer Genes
Steven B. Cogill and Liangjiang Wang
Cancer Informatics 2014:Suppl. 5 49-59
Review | Published on 19 Oct 2014

Toolbox for Mobile-Element Insertion Detection on Cancer Genomes
Wan-Ping Lee, Jiantao Wu and Gabor T. Marth
Cancer Informatics 2014:Suppl. 4 45-52
Methodology | Published on 15 Oct 2014

Mapping Splicing Quantitative Trait Loci in RNA-Seq
Cheng Jia, Yu Hu, Yichuan Liu and Mingyao Li
Cancer Informatics 2014:Suppl. 4 35-43
Original Research | Published on 15 Oct 2014

TEGS-CN: A Statistical Method for Pathway Analysis of Genome-wide Copy Number Profile
Yen-Tsung Huang, Thomas Hsu and David C. Christiani
Cancer Informatics 2014:Suppl. 4 15-23
Original Research | Published on 15 Oct 2014

Unsupervised Outlier Profile Analysis
Debashis Ghosh and Song Li
Cancer Informatics 2014:Suppl. 4 25-33
Review | Published on 15 Oct 2014

CORM: An R Package Implementing the Clustering of Regression Models Method for Gene Clustering
Jiejun Shi and Li-Xuan Qin
Cancer Informatics 2014:Suppl. 4 11-13
Review | Published on 15 Oct 2014

Profiling the microRNA Expression in Human iPS and iPS-derived Retinal Pigment Epithelium
Heuy-Ching Wang, Whitney A. Greene, Ramesh R. Kaini, Jane Shen-Gunther, Hung-I H Chen, Hong Cai and Yufeng Wang
Cancer Informatics 2014:Suppl. 5 25-35
Review | Published on 15 Oct 2014

Master Regulators, Regulatory Networks, and Pathways of Glioblastoma Subtypes
Serdar Bozdag, Aiguo Li, Mehmet Baysan, and Howard A. Fine
Cancer Informatics 2014:Suppl. 3 33-44
Original Research | Published on 15 Oct 2014

Network-based Prediction of Cancer under Genetic Storm
Ahmet Ay, Dihong Gong, Tamer Kahveci
Cancer Informatics 2014:Suppl. 3 15-31
Original Research | Published on 15 Oct 2014

Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline
Karl W. Kroll, Nima E. Mokaram, Alexander R. Pelletier, David E. Frankhouser, Maximillian S. Westphal, Paige A. Stump, Cameron L. Stump, Ralf Bundschuh, James S. Blachly and Pearlly Yan
Cancer Informatics 2014:Suppl. 3 7-14
Review | Published on 15 Oct 2014

Hereditary Breast Cancer: Clinical, Pathological and Molecular Characteristics
Martin J. Larsen, Mads Thomassen, Anne-Marie Gerdes and Torben A. Kruse
Breast Cancer: Basic and Clinical Research 2014:8 145-155
Review | Published on 15 Oct 2014

Prediction of MicroRNA Precursors Using Parsimonious Feature Sets
Petra Stepanowsky, Eric Levy, Jihoon Kim, Xiaoqian Jiang and Lucila Ohno-Machado
Cancer Informatics 2014:Suppl. 1 95-102
Review | Published on 14 Oct 2014

Integrated DNA Copy Number and Gene Expression Regulatory Network Analysis of Non-small Cell Lung Cancer Metastasis
Seyed M. Iranmanesh and Nancy L. Guo
Cancer Informatics 2014:Suppl. 5 13-23
Original Research | Published on 14 Oct 2014

CSNK1A1 and Gli2 as Novel Targets Identified Through an Integrative Analysis of Gene Expression Data, Protein-Protein Interaction and Pathways Networks in Glioblastoma Tumors: Can These Two Be Antagonistic Proteins?
Seema Mishra
Cancer Informatics 2014:13 93-108
Original Research | Published on 13 Oct 2014

Text Mining in Cancer Gene and Pathway Prioritization
Yuan Luo, Gregory Riedlinger and Peter Szolovits
Cancer Informatics 2014:Suppl. 1 69-79
Review | Published on 13 Oct 2014

Modeling Signal Transduction from Protein Phosphorylation to Gene Expression
Chunhui Cai, Lujia Chen, Xia Jiang and Xinghua Lu
Cancer Informatics 2014:Suppl. 1 59-67
Review | Published on 13 Oct 2014

RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment
Yan Guo, Shilin Zhao, Chung-I Li, Quanhu Sheng and Yu Shyr
Cancer Informatics 2014:Suppl. 6 1-5
Review | Published on 13 Oct 2014

Optogenetic Control of Apoptosis in Targeted Tissues of Xenopus laevis Embryos
Kyle Jewhurst, Michael Levin and Kelly A. McLaughlin
Journal of Cell Death 2014:7 25-31
Methodology | Published on 13 Oct 2014

Many Breast Cancer Mutations Parallel Mutations in Known Viral Cancers
Bernard Friedenson
Journal of Genomes and Exomes 2014:3 17-35
Original Research | Published on 13 Oct 2014

RAD51B Activity and Cell Cycle Regulation in Response to DNA Damage in Breast Cancer Cell Lines
Phoebe S. Lee, Jun Fang, Lea Jessop, Timothy Myers, Preethi Raj, Nan Hu, Chaoyu Wang, Philip R. Taylor, Jianjun Wang, Javed Khan, Maria Jasin and Stephen J. Chanock
Breast Cancer: Basic and Clinical Research 2014:8 135-144
Original Research | Published on 12 Oct 2014

Bayesian Disease Classification Using Copy Number Data
Subharup Guha, Yuan Ji, and Veerabhadran Baladandayuthapani
Cancer Informatics 2014:Suppl. 2 83-91
Review | Published on 01 Oct 2014

Computational Methods for CLIP-seq Data Processing
Paula H. Reyes-Herrera and Elisa Ficarra
Bioinformatics and Biology Insights 2014:8 199-207
Review | Published on 01 Oct 2014

The Comparative Genomics and Phylogenomics of Leishmania amazonensis Parasite
Diogo A Tschoeke, Gisele L Nunes, Rodrigo Jardim, Joana Lima, Aline SR Dumaresq, Monete R Gomes, Leandro de Mattos Pereira, Daniel R Loureiro, Patricia H Stoco, Herbert Leonel de Matos Guedes, Antonio Basilio de Miranda, Jeronimo Ruiz, André Pitaluga, Floriano P Silva Jr, Christian M Probst, Nicholas J Dickens, Jeremy C Mottram, Edmundo C Grisard and Alberto MR Dávila
Evolutionary Bioinformatics 2014:10 131-153
Original Research | Published on 23 Sep 2014

Chronic Lymphocytic Leukemia with t(14;18)(q32;q21) As a Sole Cytogenetic Abnormality
Ghaleb Elyamany, Kamal Fadalla, Hatem Elghezal, Omar Alsuhaibani, Hani Osman and Abdulaziz Al-Abulaaly
Clinical Medicine Insights: Pathology 2014:7 21-27
Original Research | Published on 23 Sep 2014

Introductory Editorial: Classification, Predictive Modelling, and Statistical Analysis of Cancer Data (A)
Hongmei Jiang, Lingling An, Veerabhadran Baladandayuthapani, Paul Livermore Auer
Cancer Informatics 2014:Suppl. 2 1-3
Editorial | Published on 21 Sep 2014