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Cancer Informatics

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Editor in Chief: J. T. Efird

Indexing & Databases: Pubmed, Directory of Open Access Journals, EBSCO Academic Search International, EMBase, Gale Academic OneFile, Gale Health Reference Centre, Gale InfoTrac Custom Journals, Illustrata-Natural Science, ProQuest Biological Sciences, ProQuest Natural Sciences, ProQuest SciTech, ProQuest Technology, Pubmed Central, SCOPUS

Journal Directories: EBSCO A-Z, HINARI

Processing Speed: Blind peer review by minimum of two expert reviewers and independent editorial decision within three to four weeks. Publication within average four weeks following acceptance.

ISSN: 1176-9351

H Index: 17 more info

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BioMiner: Paving the Way for Personalized Medicine (Published on 20 Apr 2015)

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Profiling Age-Related Epigenetic Markers of Stomach Adenocarcinoma in Young and Old Subjects (Published on 20 Apr 2015)

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Computing Molecular Signatures as Optima of a Bi-Objective Function: Method and Application to Prediction in Oncogenomics (Published on 19 Apr 2015)

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Catchment Area Analysis Using Bayesian Regression Modeling (Published on 19 Apr 2015)

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RNA-Seq and Network Analysis Revealed Interacting Pathways in TGF-β-Treated Lung Cancer Cell Lines (Published on 01 Apr 2015)

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Prioritization of Cancer-Related Genomic Variants by SNP Association Network (Published on 01 Apr 2015)

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Expression of Polarity Genes in Human Cancer (Published on 30 Mar 2015)

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Design and Implementation of a Comprehensive Web-based Survey for Ovarian Cancer Survivorship with an Analysis of Prediagnosis Symptoms via Text Mining (Published on 23 Mar 2015)

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HCsnip: An R Package for Semi-supervised Snipping of the Hierarchical Clustering Tree (Published on 22 Mar 2015)

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Case-Based Retrieval Framework for Gene Expression Data (Published on 19 Mar 2015)

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GeneMed: An Informatics Hub for the Coordination of Next-Generation Sequencing Studies that Support Precision Oncology Clinical Trials (Published on 19 Mar 2015)

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Introductory Editorial: Network and Pathway Analysis of Cancer Susceptibility (A) (Published on 12 Mar 2015)

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Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing (Published on 05 Mar 2015)

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Introductory Editorial: Sequencing Platform Modeling and Analysis (Published on 02 Mar 2015)

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Modeling Discrete Survival Time Using Genomic Feature Data (Published on 02 Mar 2015)

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Comprehensive Evaluation of Composite Gene Features in Cancer Outcome Prediction (Published on 24 Feb 2015)

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What Tumor Dynamics Modeling Can Teach us About Exploiting the Stem-Cell View for Better Cancer Treatment (Published on 24 Feb 2015)

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Network Analysis of Circular Permutations in Multidomain Proteins Reveals Functional Linkages for Uncharacterized Proteins (Published on 19 Feb 2015)

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Introductory Editorial: Array Platform Modeling and Analysis (A) (Published on 17 Feb 2015)

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Mapping Splicing Quantitative Trait Loci in RNA-Seq (Published on 16 Feb 2015)

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Toolbox for Mobile-Element Insertion Detection on Cancer Genomes (Published on 12 Feb 2015)

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Extending Information Retrieval Methods to Personalized Genomic-Based Studies of Disease (Published on 10 Feb 2015)

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Evaluating Methods for Modeling Epistasis Networks with Application to Head and Neck Cancer (Published on 10 Feb 2015)

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Pathway-based Biomarkers for Breast Cancer in Proteomics (Published on 09 Feb 2015)

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An Improved Version of Logistic Bayesian LASSO for Detecting Rare Haplotype-Environment Interactions with Application to Lung Cancer (Published on 09 Feb 2015)

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Regulation of Epithelial-Mesenchymal Transition in Breast Cancer Cells by Cell Contact and Adhesion (Published on 09 Feb 2015)

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Identifying Driver Genes in Cancer by Triangulating Gene Expression, Gene Location, and Survival Data (Published on 03 Feb 2015)

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Empirical Transition Probability Indexing Sparse-Coding Belief Propagation (ETPI-SCoBeP) Genome Sequence Alignment (Published on 01 Feb 2015)

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sfDM: Open-Source Software for Temporal Analysis and Visualization of Brain Tumor Diffusion MR Using Serial Functional Diffusion Mapping (Published on 01 Feb 2015)

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Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays (Published on 27 Jan 2015)

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Prognostic Gene Signature Identification Using Causal Structure Learning: Applications in Kidney Cancer (Published on 27 Jan 2015)

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Mitochondrial Variations in Non-Small Cell Lung Cancer (NSCLC) Survival (Published on 27 Jan 2015)

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Nonparametric Tests for Differential Histone Enrichment with ChIP-Seq Data (Published on 27 Jan 2015)

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Inferring Active and Prognostic Ligand-Receptor Pairs with Interactions in Survival Regression Models (Published on 26 Jan 2015)

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Practical Issues in Screening and Variable Selection in Genome-Wide Association Analysis (Published on 14 Jan 2015)

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Network-Constrained Group Lasso for High-Dimensional Multinomial Classification with Application to Cancer Subtype Prediction (Published on 12 Jan 2015)

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Detection of Pancreatic Cancer Biomarkers Using Mass Spectrometry (Published on 06 Jan 2015)

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Web Tool for Estimating the Cancer Hazard Rates in Aging (Published on 17 Dec 2014)

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Statistical Issues in the Design and Analysis of nCounter Projects (Published on 14 Dec 2014)

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ordinalgmifs: An R Package for Ordinal Regression in High-dimensional Data Settings (Published on 10 Dec 2014)

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Bayesian Hierarchical Models for Protein Networks in Single-Cell Mass Cytometry (Published on 10 Dec 2014)

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Overcome Support Vector Machine Diagnosis Overfitting (Published on 09 Dec 2014)

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Normal Cell-Type Epigenetics and Breast Cancer Classification: A Case Study of Cell Mixture–Adjusted Analysis of DNA Methylation Data from Tumors (Published on 09 Dec 2014)

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Growth Rate Analysis and Efficient Experimental Design for Tumor Xenograft Studies (Published on 09 Dec 2014)

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Stratified Pathway Analysis to Identify Gene Sets Associated with Oral Contraceptive Use and Breast Cancer (Published on 09 Dec 2014)

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CARAT-GxG: CUDA-Accelerated Regression Analysis Toolkit for Large-Scale Gene–Gene Interaction with GPU Computing System (Published on 09 Dec 2014)

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Computational Construction of Antibody–Drug Conjugates Using Surface Lysines as the Antibody Conjugation Site and a Non-cleavable Linker (Published on 08 Dec 2014)

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Semantically Linking In Silico Cancer Models (Published on 08 Dec 2014)

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Bayesian Joint Selection of Genes and Pathways: Applications in Multiple Myeloma Genomics (Published on 07 Dec 2014)

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Trial Prospector: Matching Patients with Cancer Research Studies Using an Automated and Scalable Approach (Published on 04 Dec 2014)

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Article Search

BioMiner: Paving the Way for Personalized Medicine (Published on 20 Apr 2015)

Profiling Age-Related Epigenetic Markers of Stomach Adenocarcinoma in Young and Old Subjects (Published on 20 Apr 2015)

Computing Molecular Signatures as Optima of a Bi-Objective Function: Method and Application to Prediction in Oncogenomics (Published on 19 Apr 2015)

Catchment Area Analysis Using Bayesian Regression Modeling (Published on 19 Apr 2015)

RNA-Seq and Network Analysis Revealed Interacting Pathways in TGF-β-Treated Lung Cancer Cell Lines (Published on 01 Apr 2015)

Prioritization of Cancer-Related Genomic Variants by SNP Association Network (Published on 01 Apr 2015)

Expression of Polarity Genes in Human Cancer (Published on 30 Mar 2015)

Design and Implementation of a Comprehensive Web-based Survey for Ovarian Cancer Survivorship with an Analysis of Prediagnosis Symptoms via Text Mining (Published on 23 Mar 2015)

HCsnip: An R Package for Semi-supervised Snipping of the Hierarchical Clustering Tree (Published on 22 Mar 2015)

Case-Based Retrieval Framework for Gene Expression Data (Published on 19 Mar 2015)

GeneMed: An Informatics Hub for the Coordination of Next-Generation Sequencing Studies that Support Precision Oncology Clinical Trials (Published on 19 Mar 2015)

Introductory Editorial: Network and Pathway Analysis of Cancer Susceptibility (A) (Published on 12 Mar 2015)

Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing (Published on 05 Mar 2015)

Introductory Editorial: Sequencing Platform Modeling and Analysis (Published on 02 Mar 2015)

Modeling Discrete Survival Time Using Genomic Feature Data (Published on 02 Mar 2015)

Comprehensive Evaluation of Composite Gene Features in Cancer Outcome Prediction (Published on 24 Feb 2015)

What Tumor Dynamics Modeling Can Teach us About Exploiting the Stem-Cell View for Better Cancer Treatment (Published on 24 Feb 2015)

Network Analysis of Circular Permutations in Multidomain Proteins Reveals Functional Linkages for Uncharacterized Proteins (Published on 19 Feb 2015)

Introductory Editorial: Array Platform Modeling and Analysis (A) (Published on 17 Feb 2015)

Mapping Splicing Quantitative Trait Loci in RNA-Seq (Published on 16 Feb 2015)

Toolbox for Mobile-Element Insertion Detection on Cancer Genomes (Published on 12 Feb 2015)

Extending Information Retrieval Methods to Personalized Genomic-Based Studies of Disease (Published on 10 Feb 2015)

Evaluating Methods for Modeling Epistasis Networks with Application to Head and Neck Cancer (Published on 10 Feb 2015)

Pathway-based Biomarkers for Breast Cancer in Proteomics (Published on 09 Feb 2015)

An Improved Version of Logistic Bayesian LASSO for Detecting Rare Haplotype-Environment Interactions with Application to Lung Cancer (Published on 09 Feb 2015)

Regulation of Epithelial-Mesenchymal Transition in Breast Cancer Cells by Cell Contact and Adhesion (Published on 09 Feb 2015)

Identifying Driver Genes in Cancer by Triangulating Gene Expression, Gene Location, and Survival Data (Published on 03 Feb 2015)

Empirical Transition Probability Indexing Sparse-Coding Belief Propagation (ETPI-SCoBeP) Genome Sequence Alignment (Published on 01 Feb 2015)

sfDM: Open-Source Software for Temporal Analysis and Visualization of Brain Tumor Diffusion MR Using Serial Functional Diffusion Mapping (Published on 01 Feb 2015)

Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays (Published on 27 Jan 2015)

Prognostic Gene Signature Identification Using Causal Structure Learning: Applications in Kidney Cancer (Published on 27 Jan 2015)

Mitochondrial Variations in Non-Small Cell Lung Cancer (NSCLC) Survival (Published on 27 Jan 2015)

Nonparametric Tests for Differential Histone Enrichment with ChIP-Seq Data (Published on 27 Jan 2015)

Inferring Active and Prognostic Ligand-Receptor Pairs with Interactions in Survival Regression Models (Published on 26 Jan 2015)

Practical Issues in Screening and Variable Selection in Genome-Wide Association Analysis (Published on 14 Jan 2015)

Network-Constrained Group Lasso for High-Dimensional Multinomial Classification with Application to Cancer Subtype Prediction (Published on 12 Jan 2015)

Detection of Pancreatic Cancer Biomarkers Using Mass Spectrometry (Published on 06 Jan 2015)

Web Tool for Estimating the Cancer Hazard Rates in Aging (Published on 17 Dec 2014)

Statistical Issues in the Design and Analysis of nCounter Projects (Published on 14 Dec 2014)

ordinalgmifs: An R Package for Ordinal Regression in High-dimensional Data Settings (Published on 10 Dec 2014)

Bayesian Hierarchical Models for Protein Networks in Single-Cell Mass Cytometry (Published on 10 Dec 2014)

Overcome Support Vector Machine Diagnosis Overfitting (Published on 09 Dec 2014)

Normal Cell-Type Epigenetics and Breast Cancer Classification: A Case Study of Cell Mixture–Adjusted Analysis of DNA Methylation Data from Tumors (Published on 09 Dec 2014)

Growth Rate Analysis and Efficient Experimental Design for Tumor Xenograft Studies (Published on 09 Dec 2014)

Stratified Pathway Analysis to Identify Gene Sets Associated with Oral Contraceptive Use and Breast Cancer (Published on 09 Dec 2014)

CARAT-GxG: CUDA-Accelerated Regression Analysis Toolkit for Large-Scale Gene–Gene Interaction with GPU Computing System (Published on 09 Dec 2014)

Computational Construction of Antibody–Drug Conjugates Using Surface Lysines as the Antibody Conjugation Site and a Non-cleavable Linker (Published on 08 Dec 2014)

Semantically Linking In Silico Cancer Models (Published on 08 Dec 2014)

Bayesian Joint Selection of Genes and Pathways: Applications in Multiple Myeloma Genomics (Published on 07 Dec 2014)

Trial Prospector: Matching Patients with Cancer Research Studies Using an Automated and Scalable Approach (Published on 04 Dec 2014)

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