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Evolutionary Bioinformatics


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Editor in Chief: Dr Dennis Wall

Aims & Scope: An international, peer-reviewed journal focusing on evolutionary bioinformatics. There is growing ... more

Indexing: Pubmed, Chemical Abstracts Service, Current Contents/Agriculture, Biology and Environmental Sciences, Current Contents/Life Sciences, Directory of Open Access Journals, EBSCO Academic Search Complete, EMBase, EMBiology, Google Scholar, Intute, Journal Citation Reports/Science Edition, OAlster, Open J-Gate, Pubget, Pubmed Central, Socolar

Processing Time: Average 21 days to editorial decision

ISSN: 1176-9343

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Molecular Phylogeny of Edge Hill Virus Supports its Position in the Yellow Fever Virus Group and Identifies a New Genetic Variant (613 Views)

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Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference Versus Group-Specific Taxon Sampling (868 Views)

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An Application of Supertree Methods to Mammalian Mitogenomic Sequences (826 Views)

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Relative Codon Adaptation Index, a Sensitive Measure of Codon Usage Bias (805 Views)

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A Comparative Taxonomy of Parallel Algorithms for RNA Secondary Structure Prediction (991 Views)

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Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions (1180 Views)

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Clustering Protein Sequences Using Affinity Propagation Based on an Improved Similarity Measure (1382 Views)

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Snapshots of Tree Space (1503 Views)

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Genome-Wide Identification and Evolutionary Analysis of the Animal Specific ETS Transcription Factor Family (1635 Views)

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A Model for Protein Sequence Evolution Based on Selective Pressure for Protein Stability: Application to Hemoglobins (1822 Views)

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On the Use of Bootstrapped Topologies in Coalescent-Based Bayesian MCMC Inference: A Comparison of Estimation and Computational Efficiencies (2548 Views)

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PhyLIS: A Simple GNU/Linux Distribution for Phylogenetics and Phyloinformatics (2469 Views)

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A Comprehensive Analysis of Gene Expression Evolution Between Humans and Mice (2274 Views)

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Initial Implementation of a Comparative Data Analysis Ontology (1998 Views)

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A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies (1770 Views)

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Phylogenetic Applications of the Minimum Contradiction Approach on Continuous Characters (1681 Views)

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Phylogenetic Analyses Reveal Monophyletic Origin of the Ergot Alkaloid Gene dmaW in Fungi (1679 Views)

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Evolution and Functional Diversification of the GLI Family of Transcription Factors in Vertebrates (1768 Views)

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REFGEN and TREENAMER: Automated Sequence Data Handling for Phylogenetic Analysis in the Genomic Era (2299 Views)

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The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics (3412 Views)

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Evidence for a Complex Mosaic Genome Pattern in a Full-length Hepatitis C Virus Sequence (1584 Views)

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Inconsistent Distances in Substitution Matrices can be Avoided by Properly Handling Hydrophobic Residues (1641 Views)

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Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers (2935 Views)

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Minimum Contradiction Matrices in Whole Genome Phylogenies (1806 Views)

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Estimation of Genetic Effects and Genotype-Phenotype Maps (2238 Views)

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Testing the Accuracy of Eukaryotic Phylogenetic Profiles for Prediction of Biological Function (1918 Views)

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Electrostatic and Functional Analysis of the Seven-Bladed WD β-Propellers (1654 Views)

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Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification (8050 Views)

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Exploring the Evolutionary History of the Differentially Expressed Genes between Human Populations: Action of Recent Positive Selection (5355 Views)

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Maximum Gene-Support Tree (2389 Views)

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Examining Ancient Inter-domain Horizontal Gene Transfer (2484 Views)

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Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology (2172 Views)

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Dissection of Functional Residues in Receptor Activity-Modifying Proteins Through Phylogenetic and Statistical Analyses (2118 Views)

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Assessing the Evolution of Gene Expression Using Microarray Data (2569 Views)

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Identifying Coevolving Partners from Paralogous Gene Families (2780 Views)

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The ABCs of MGR with DCJ (2098 Views)

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Comparative Evolutionary Histories of the Fungal Chitinase Gene Family Reveal Non-Random Size Expansions and Contractions due to Adaptive Natural Selection (3211 Views)

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Expected Anomalies in the Fossil Record (2485 Views)

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How to Summarize Estimates of Ancestral Divergence Times (3104 Views)

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A Simple Derivation of the Distribution of Pairwise Local Protein Sequence Alignment Scores (6547 Views)

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Why Should We Care About Molecular Coevolution? (2713 Views)

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Detecting Microsatellites in Genome Data: Variance in Definitions and Bioinformatic Approaches Cause Systematic Bias (2730 Views)

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Reverse Conservation Analysis Reveals the Specificity Determining Residues of Cytochrome P450 Family 2 (CYP 2) (2137 Views)

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SPR Distance Computation for Unrooted Trees (2844 Views)

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Evolution of the Influenza A Virus: Some New Advances (2133 Views)

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The 2006 NESCent Phyloinformatics Hackathon: A Field Report (2645 Views)

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Phylogenetic Study of the Evolution of PEP-Carboxykinase (1592 Views)

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Efficient Tree Searches with Available Algorithms (1474 Views)

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Structural Evolution of the ABC Transporter Subfamily B (1679 Views)

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An Insulin-Like Modular Basis for the Evolution of Glucose Transporters (GLUT) with Implications for Diabetes (2199 Views)

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Minimizing Contradictions on Circular Order of Phylogenic Trees (2217 Views)

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Selection Effects on the Positioning of Genes and Gene Structures from the Interplay of Replication and Transcription in Bacterial Genomes (2551 Views)

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Phylogenomic Analysis Reveals Extensive Phylogenetic Mosaicism in the Human GPCR Superfamily (1762 Views)

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Non-Molecular-Clock-Like Evolution following Viral Origins in Homo sapiens (2322 Views)

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Underlying Principles of Natural Selection in Network Evolution: Systems Biology Approach (2067 Views)

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Hedging Our Bets: The Expected Contribution of Species to Future Phylogenetic Diversity (1937 Views)

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Genome Signatures, Self-Organizing Maps and Higher Order Phylogenies: A Parametric Analysis (2239 Views)

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The GC Skew Index: A Measure of Genomic Compositional Asymmetry and the Degree of Replicational Selection (3724 Views)

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Interactions Between SNP Alleles at Multiple Loci and Variation in Skin Pigmentation in 122 Caucasians (1786 Views)

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Identifcation of Novel Retroid Agents in Danio rerio, Oryzias latipes, Gasterosteus aculeatus and Tetraodon nigroviridis (1799 Views)

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Gathering Computational Genomics and Proteomics to Unravel Adaptive Evolution (2101 Views)

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Prediction of Protein-protein Interactions on the Basis of Evolutionary Conservation of Protein Functions (3200 Views)

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Characterization and Evolution of the Cell Cycle-Associated Mob Domain-Containing Proteins in Eukaryotes (1954 Views)

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Environmental Quality, Developmental Plasticity and the Thrifty Phenotype: A Review of Evolutionary Models (2676 Views)

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Choosing and Using Introns in Molecular Phylogenetics (2773 Views)

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Fast Genes and Slow Clades: Comparative Rates of Molecular Evolution in Mammals (4547 Views)

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A Reduction Algorithm for Computing The Hybridization Number of Two Trees (2087 Views)

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An Improved Implementation of Codon Adaptation Index (3059 Views)

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Mammoth and Elephant Phylogenetic Relationships: Mammut Americanum, the Missing Outgroup (6003 Views)

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Mlcoalsim: Multilocus Coalescent Simulations (2494 Views)

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On the Adaptive Design Rules of Biochemical Networks in Evolution (4805 Views)

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Improved Heuristics for Minimum-Flip Supertree Construction (1871 Views)

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Why Bacteriophage Encode Exotoxins and other Virulence Factors (2257 Views)

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Outsourcing the Nucleus: Nuclear Pore Complex Genes are no Longer Encoded in Nucleomorph Genomes (2217 Views)

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The identification of functional motifs in temporal gene expression analysis (2264 Views)

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Topological Bias in Distance-Based Phylogenetic Methods: Problems with Over- and Underestimated Genetic Distances (1859 Views)

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MySSP: Non-stationary evolutionary sequence simulation, including indels (1659 Views)

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Pattern-Based Phylogenetic Distance Estimation and Tree Reconstruction (2148 Views)

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Estimation of Phylogeny Using a General Markov Model (1880 Views)

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Multiple Property Tolerance Analysis for the Evaluation of Missense Mutations (1623 Views)

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Evolution of proteins and proteomes: a phylogenetics approach (1912 Views)

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Arlequin (version 3.0): An integrated software package for population genetics data analysis (3603 Views)

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A Fast and Specific Alignment Method for Minisatellite Maps (1989 Views)

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ALFRED: An Allele Frequency Database for Microevolutionary Studies (1709 Views)

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Genome Halving with an Outgroup (1560 Views)

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Phylogenetic biodiversity assessment based on systematic nomenclature (1881 Views)

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Estimating the Relative Order of Speciation or Coalescence Events on a Given Phylogeny (2174 Views)

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Fast Structural Search in Phylogenetic Databases (2784 Views)

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The Role of the Phylogenetic Diversity Measure, PD, in Bio-informatics: Getting the Definition Right (2222 Views)

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Co-evolutionary Rates of Functionally Related Yeast Genes (1612 Views)

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A Nuclear Ribosomal DNA Phylogeny of Acer Inferred with Maximum Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences (2905 Views)

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Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges (4782 Views)

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Minimum Conflict Individual Haplotyping from SNP Fragments and Related Genotype (1640 Views)

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Gaussian Quadrature Formulae for Arbitrary Positive Measures (1718 Views)

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Identification of Conflicting Selective Effects on Highly Expressed Genes (3918 Views)

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MapToGenome: A Comparative Genomic Tool that Aligns Transcript Maps to Sequenced Genomes (2477 Views)

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LASER: A Maximum Likelihood Toolkit for Detecting Temporal Shifts in Diversification Rates From Molecular Phylogenies (2256 Views)

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Total Evidence, Average Consensus and Matrix Representation with Parsimony: What a Difference Distances Make (1636 Views)

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Estimating Population Parameters using the Structured Serial Coalescent with Bayesian MCMC Inference when some Demes are Hidden (1548 Views)

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Unravelling Selection Shifts Among Foot-and-Mouth Disease Virus (FMDV) Serotypes (2415 Views)

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PIRSF Family Classification System for Protein Functional and Evolutionary Analysis (3521 Views)

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Spectral Analysis of Sequence Variability in Basic-Helix-loop-helix (bHLH) Protein Domains (1494 Views)

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CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies (2421 Views)

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MBEToolbox 2.0: An enhanced version of a MATLAB toolbox for Molecular Biology and Evolution (3073 Views)

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Modelling prokaryote gene content (1824 Views)

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Assessing the Applicability of the GTR Nucleotide Substitution Model Through Simulations (2109 Views)

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Using minimum bootstrap support for splits to construct confidence regions for trees (2105 Views)

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A new effective method for estimating missing values in the sequence data prior to phylogenetic analysis (2551 Views)

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3 UTR-located ALU Elements: Donors of Potetial miRNA Target Sites and Mediators of Network miRNA-based Regulatory Interactions (2069 Views)

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Functionality and the evolution of marginal stability in proteins: Inferences from lattice simulations (1304 Views)

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Evolution, Bioinformatics and Evolutionary Bioinformatics Online (2238 Views)

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Positional Homology in Bacterial Genomes (1522 Views)

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Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes (1689 Views)

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Finding common protein interaction patterns across organisms (1699 Views)

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Coevolution of exploiter specialization and victim mimicry can be cyclic and saltational (1485 Views)

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