Evolutionary Bioinformatics
Synopsis: An open access, peer reviewed electronic journal that covers computational evolutionary biology and evolutionary bioinformatics.
Indexing: 12 major databases including Pubmed.
Processing time: Decision in 2 weeks for 90% of papers.
Visibility: Most popular article read 3200+ times.
About this journal
Aims and scope:
Evolutionary Bioinformatics is an international, peer-reviewed journal focusing on evolutionary bioinformatics. There is growing awareness that to understand organismal form and function, through the use of molecular, genetic, genomic, and proteomic data, due consideration must be given to an organism's evolutionary context - history constrains the path an organism is obliged to take, and leaves an indelible mark on its component parts. Evolutionary Bioinformatics publishes papers on all aspects of computational evolutionary biology and evolutionary bioinformatics.
Editorial standards and procedures:
All submissions to this journal, with the exception of editorials and dedications (obituaries), are subject to rigorous peer review by a minimum of two peer reviewers who demonstrate current research experience in the paper's subject area. Reviewers are required to provide in-depth, fair and objective reviews. They may not act as reviewers if they are in a conflict of interest. All final publishing decisions are made by the Editor in Chief or Associate Editor.
Official journal of the Bioinformatics Institute:
Evolutionary Bioinformatics was established as the official journal of The Bioinformatics Institute. The Institute is a joint-venture between the University of Auckland, situated in New Zealand’s largest city, and AgResearch, New Zealand’s largest Crown Research Institute. Allen Rodrigo, Professor of Computational Biology and Bioinformatics, is the Institute’s Director, and it was at his initiative that the journal was established.
Working in collaboration with The Institute is Libertas Academica, a publishing firm committed to high editorial standards, open access publishing methodologies and superior user-service standards. There is much work involved ‘behind-the-scenes’ that goes towards the finished result seen by readers of Evolutionary Bioinformatics. Key amongst this work, which also includes attracting the best submissions, supervising effective peer review and typesetting, is gaining acceptance for indexing by outside organizations.
Indexing:
Evolutionary Bioinformatics is indexed by:
- Pubmed
- Pubmed Central
- CAS
- DOAJ
- Embase
- Embiology
- Science Citation Index Expanded (SciSearch®)
- Journal Citation Reports/Science Edition
- Current Contents®/Agriculture, Biology and Environmental Sciences
- Current Contents®/Life Sciences
- Google Scholar
- EBSCO Academic Search Complete
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This journal has been awarded a SPARC Europe Seal. The Seal is an initiative of SPARC Europe (Scholarly Publishing and Academic Resources Coalition) and the Directory of Open Access Journals (DOAJ) which is awarded to journals applying a Creative Commons CC-BY copyright license and that make journal metadata accessible to DOAJ.
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National Institutes of Health Public Access Policy compliant:
As of April 7 2008, the US NIH Public Access Policy requires that all peer reviewed articles resulting from research carried out with NIH funding be deposited in the Pubmed Central archive.
If you are an NIH employee or grantee Libertas Academica will ensure that you comply with the policy by depositing your paper at Pubmed Central on your behalf.
Call for papers:
The Editor in Chief welcomes submissions. Submissions of the following types are invited:
- Original research articles.
- Reviews: comprehensive, authoritative, descriptions of any subject within the journal's scope. They may cover basic science and clinical reviews, ethics, pro/con debates, and equipment reviews.
- Commentaries: focused and opinionated articles on any subject within the journal's scope. These articles are usually related to a contemporary issue.
- Hypotheses: articles that present an original hypothesis backed solely by previously published results rather than any new evidence. They should outline significant progress in thinking that would also be testable.
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- Methodology articles: these discuss a new experimental method, test or procedure. The article must describe a demonstrable advance on what is currently available. The method needs to have been well tested and ideally, but not necessarily, used in a way that proves its value.
- Short reports: brief reports of data from original research.
- Meeting reports: a report pertaining to activity at a meeting or conference Articles published in this journal are immediately available without delay upon publication and enjoy substantial visibility.
- Case reports: reports of clinical cases that can be educational, describe a diagnostic or therapeutic dilemma, suggest an association, or present an important adverse reaction. Case reports must meet appropriate ethical standards.
All submissions are subject to prompt, objective and fair peer review in compliance with our Fairness in Peer Review Policy. Copyright in published articles remains with the author(s). Authors are continually informed of the progress of their paper and our staff are friendly and responsive.
One author recently wrote: "I would like to say that this is the most author-friendly editing process I have experienced in over 150 publications. Thank you most sincerely."
Criteria for publication:
Publication is dependent on peer reviewers' judgement of papers. Reviewers are asked to provide thoughtful and unbiased feedback to authors to ensure that the conclusions of papers are valid and manuscripts achieve reasonable standards of scholarliness and intelligibility.
Previous work in the field must be acknowledged and papers should read without unreasonable difficulty. Papers should fit comfortably within the scope of the journal.
Reviewers are asked to act in a fair, objective and constructive manner which maintains quality standards and helps authors to communicate their research. They are instructed that in areas of genuinely novel research issues may be raised which cannot immediately be resolved and that absolutely rigorous validation of data may therefore not be possible.
More information on the role of peer reviewers is available on the information for reviewers page. Where authors consider that reviewers have made recommendations which are unreasonable, unobjective or ill-founded they may appeal them to the Editor in Chief or Associate Editor under our Fairness in Peer Review Policy.
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We are willing to consider papers which have been peer reviewed by other journals but not accepted for publication.
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All submissions to this journal are subject to an article processing fee if they are accepted for publication. Article processing fees are used to fund the processing of your paper and development of the journal. Article processing fees are the only compulsory charge you will face and do not vary according to word count, page count, colour figures or any other factor. There is no additional charge for the author(s) to make any use of their article and no charge to readers to access it.
Full fee waivers are available for authors working in undeveloped nations and partial discounts of 20-50% are available to authors in other nations. Authors must be able to verifiably demonstrate their suitability for a discount or waiver. Availability of waivers and discounts is subject to monthly availability and is given at the publisher's discretion. Waivers and discounts must be applied for prior to submission. Neither are available after submission.
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Applicants must be able to demonstrate at least five years of continuous experience in the journal's subject area including at least two in the previous 24 months.
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2005 backfile now available on Pubmed.
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Dr Dennis Wall appointed as Editor in Chief.
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Peer reviewers are sought. Click here to apply or to update your details.
Evolutionary Bioinformatics is now indexed by Pubmed
Assessing the Applicability of the GTR Nucleotide Substitution Model Through Simulations
Laurent Gatto, Daniele Catanzaro and Michel C. Milinkovitch
Laboratory of Evolutionary Genetics, Institute for Molecular Biology and Medicine, Université Libre de Bruxelles, CP300, rue Jeener et Brachet 12, 6041 Gosselies, Belgium.
Abstract: The General Time Reversible (GTR) model of nucleotide substitution is at the core of many distance-based and character-based phylogeny inference methods. The procedure described by Waddell and Steel (1997), for estimating distances and instantaneous substitution rate matrices, R, under the GTR model, is known to be inapplicable under some conditions, ie, it leads to the inapplicability of the GTR model. Here, we simulate the evolution of DNA sequences along 12 trees characterized by different combinations of tree length, (non-)homogeneity of the substitution rate matrix R, and sequence length. We then evaluate both the frequency of the GTR model inapplicability for estimating distances and the accuracy of inferred alignments. Our results indicate that, inapplicability of the Waddel and Steel’s procedure can be considered a real practical issue, and illustrate that the probability of this inapplicability is a function of substitution rates and sequence length. We also discuss the implications of our results on the current implementations of maximum likelihood and Bayesian methods.
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