Phylogenetics

Open Access Journals and Articles on Libertas Academica related to Phylogenetics.

Articles

Improved Heuristics for Minimum-Flip Supertree Construction

Topological Bias in Distance-Based Phylogenetic Methods: Problems with Over- and Underestimated Genetic Distances

Pattern-Based Phylogenetic Distance Estimation and Tree Reconstruction

Estimating the Relative Order of Speciation or Coalescence Events on a Given Phylogeny

The Role of the Phylogenetic Diversity Measure, PD, in Bio-informatics: Getting the Definition Right

LASER: A Maximum Likelihood Toolkit for Detecting Temporal Shifts in Diversification Rates From Molecular Phylogenies

CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies

Modelling prokaryote gene content

Assessing the Applicability of the GTR Nucleotide Substitution Model Through Simulations

Using minimum bootstrap support for splits to construct confidence regions for trees

Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges

Estimation of Phylogeny Using a General Markov Model

Evolution of proteins and proteomes: a phylogenetics approach

Phylogenetic biodiversity assessment based on systematic nomenclature

Fast Structural Search in Phylogenetic Databases

A new effective method for estimating missing values in the sequence data prior to phylogenetic analysis

Choosing and Using Introns in Molecular Phylogenetics

Hedging Our Bets: The Expected Contribution of Species to Future Phylogenetic Diversity

Phylogenomic Analysis Reveals Extensive Phylogenetic Mosaicism in the Human GPCR Superfamily

Minimizing Contradictions on Circular Order of Phylogenic Trees

Phylogenetic Study of the Evolution of PEP-Carboxykinase

Comparative Evolutionary Histories of the Fungal Chitinase Gene Family Reveal Non-Random Size Expansions and Contractions due to Adaptive Natural Selection

Expected Anomalies in the Fossil Record

Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology

Testing the Accuracy of Eukaryotic Phylogenetic Profiles for Prediction of Biological Function

Minimum Contradiction Matrices in Whole Genome Phylogenies

Evolution of the G+C Content Frontier in the Rat Cytomegalovirus Genome

Initial Implementation of a comparative Data Analysis Ontology

PhyLIS: A Simple GNU/Linux Distribution for Phylogenetics and Phyloinformatics