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Molecular Phylogeny of Edge Hill Virus Supports its Position in the Yellow Fever Virus Group and Identifies a New Genetic Variant

Authors: Joanne Macdonald, Michael Poidinger, John S. Mackenzie, Richard C. Russell, Stephen Doggett, Annette K. Broom, Debra Phillips, Joseph Potamski, Geoff Gard, Peter Whelan, Richard Weir, Paul R. Young, Debra Gendle, Sheryl Maher, Ross T. Barnard and Roy A. Hall
Publication Date: 15 Jun 2010
Evolutionary Bioinformatics 2010:6 91-96

Joanne Macdonald1, Michael Poidinger1, John S. Mackenzie1, Richard C. Russell2, Stephen Doggett2, Annette K. Broom3, Debra Phillips4, Joseph Potamski4, Geoff Gard5, Peter Whelan6, Richard Weir5, Paul R. Young1, Debra Gendle1, Sheryl Maher1, Ross T. Barnard1 and Roy A. Hall1

1Centre for Infectious Disease Research, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Qld. 4072, Australia. 2Department of Medical Entomology, The University of Sydney, Westmead Hospital, Westmead, NSW, 2145, Australia. 3Discipline of Microbiology and Immunology, School of Biomedical, Biomolecular, and Chemical Sciences, The University of Western Australia, Nedlands, Western Australia 6009, Australia. 4Public Health Virology, Queensland Health Forensic and Scientific Services, Coopers Plains, Qld. 22222, Australia. 5A.L. Rose Laboratory, Berrimah Veterinary Laboratories, Berrimah Farm, Berrimah, NT. 0828, Australia. 6Medical Entomology, Centre for Disease Control, NT Department of Health and Families, Darwin, NT. 0811, Australia.  

Abstract

Edge Hill virus (EHV) is a mosquito-borne flavivirus isolated throughout Australia during mosquito surveillance programs. While not posing an immediate threat to the human population, EHV is a taxonomically interesting flavivirus since it remains the only member of the yellow fever virus (YFV) sub-group to be detected within Australia. Here we present both an antigenic and genetic investigation of collected isolates, and confirm taxonomic classification of the virus within the YFV-group. Isolates were not clustered based on geographical origin or time of isolation, suggesting that minimal genetic evolution of EHV has occurred over geographic distance or time within the EHV cluster. However, two isolates showed significant differences in antigenic reactivity patterns, and had a much larger divergence from the EHV prototype (19% nucleotide and 6% amino acid divergence), indicating a distinct subtype or variant within the EHV subgroup.