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Abstract
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Tumor Genome Wide DNA Alterations Assessed by Array CGH in Patients with Poor and Excellent Survival Following Operation for Colorectal Cancer     (12/Oct/2007)


Kristina K. Lagerstedt, Johan Staaf1, Göran Jönsson1, Elisabeth Hansson2, Christina Lönnroth, Ulf Kressner2, Lars Lindström, Svante Nordgren, Åke Borg1 and Kent Lundholm Department of Surgery, Surgical Metabolic Research Laboratory at Lundberg Lab. for Cancer Research, Sahlgrenska University Hospital, Göteborg University, SE 413 45 Göteborg, Sweden. 1Department of Oncology, University Hospital,...


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Normalized, Segmented or Called aCGH Data?     (17/Sep/2007)


Wessel N. van Wieringen1, Mark A. van de Wiel1,2 and Bauke Ylstra2 1Department of Mathematics, Vrije Universiteit De Boelelaan 1081a, 1081 HV Amsterdam, The Netherlands. 2VU University Medical Center,P.O. Box 7075, 1007 MB Amsterdam, The Netherlands.Abstract: Array comparative genomic hybridization (aCGH) is a high-throughput lab technique to measure genome-wide chromosomal...


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Overlay Tool© for aCGHViewer©: An Analysis Module Built for aCGHViewer© used to Perform Comparisons of Data Derived from Different Microarray Platforms     (08/Aug/2007)


Ken C. Lo1, Ganesh Shankar1, Yaron Turpaz2, Dione Bailey2, Michael R. Rossi1,3, Tania Burkhardt, Ping Liang and John K. Cowell3 1Department of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, NY 14263. 2Affymetrix, Inc. Santa Clara, CA 95051. 3Yale University School of Medicine, Department of Genetics, SHM-I321, 333 Cedar Street, New...


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Enhanced Wellbeing of Adults with Type 2 Diabetes following Multi-Vitamin and Mineral Supplementation for Three Months in a Randomised, Double-blind, Cross-over Pilot Study     (14/Feb/2007)


George Marakis1, Ann F. Walker1, Hugh C.R. Simpson2, Martyn Byng3 and Paul A. Robinson41Hugh Sinclair Unit of Human Nutrition, School of Chemistry, Food Biosciences & Pharmacy, University of Reading, Reading, United Kingdom. 2Diabetes Centre, RBH & Battle Hospital NHS Trust, Melrose House West, Reading, United Kingdom. 3Department of Applied Statistics,...


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Computational Methods for the Analysis of Array Comparative Genomic Hybridization     (10/Feb/2007)


Raj Chari*,1,2, William W. Lockwood1,2 and Wan L. Lam1 1Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver BC, Canada V5Z 1L3; 2These authors contributed equally to this workAbstract: Array comparative genomic hybridization (array CGH) is a technique for assaying the copy number status of cancer genomes. The...


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CGHregions: Dimension Reduction for Array CGH Data with Minimal Information Loss     (08/Feb/2007)


Mark A. van de Wiel1,2 and Wessel N. van Wieringen21Department of Pathology and Department of Biostatistics (KEB), VU University Medical Center, Amsterdam, The Netherlands. 2Department of Mathematics, Vrije Universiteit, Amsterdam, The Netherlands. Abstract: An algorithm to reduce multi-sample array CGH data from thousands of clones to tens or hundreds of...


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aCGHViewer: A Generic Visualization Tool For aCGH data     (08/Feb/2007)


Ganesh Shankar1, Michael R. Rossi1, Devin E. McQuaid1, Jeffrey M. Conroy1, Daniel G. Gaile2, John K. Cowell1, Norma J. Nowak1, Ping Liang11Department of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, NY 14263 USA; 2Department of Biostatistics, The State University of New York at Buffalo, Buffalo, NY 14214 USA.Abstract: Array-Comparative Genomic...


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Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data     (03/Feb/2007)


Andreu Alibés, Edward R. Morrissey, Andrés Cañada, Oscar M. Rueda, David Casado, Patricio Yankilevich and Ramón Díaz-UriarteStatistical Computing Team, Structural and Computational Biology Programme, Spanish National Cancer Center (CNIO), Melchor Fernández Almagro 3, Madrid, 28029, Spain.Type: Application Note Abstract: The analysis of expression and CGH arrays plays a central role...