Gromita: A Fully Integrated Graphical User Interface to Gromacs 4
Diamantis Sellis, Dimitrios Vlachakis and Metaxia Vlassi
Institute of Biology, National Centre for Scientific Research “Demokritos”, 15310 Ag. Paraskevi Attikis, Greece.
Abstract
Gromita is a fully integrated and efficient graphical user interface (GUI) to the recently updated molecular dynamics suite Gromacs, version 4. Gromita is a cross-platform, perl/tcl-tk based, interactive front end designed to break the command line barrier and introduce a new user-friendly environment to run molecular dynamics simulations through Gromacs. Our GUI features a novel workflow interface that guides the user through each logical step of the molecular dynamics setup process, making it accessible to both advanced and novice users. This tool provides a seamless interface to the Gromacs package, while providing enhanced functionality by speeding up and simplifying the task of setting up molecular dynamics simulations of biological systems. Gromita can be freely downloaded from http://bio.demokritos.gr/gromita/.
Readers of this also read:
- Gromita: A Fully Integrated Graphical User Interface to Gromacs 4
- Gene Expression Based Leukemia Sub‑Classification Using Committee Neural Networks
- Choosing and Using Introns in Molecular Phylogenetics
- Software for Quantifying and Simulating Microsatellite Genotyping Error
- Gene Expression Based Leukemia Sub‑Classification Using Committee Neural Networks
