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Gene Regulation and Systems Biology

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Editor in Chief: James Willey

Indexing & Databases: Pubmed, Directory of Open Access Journals, EBSCO Academic Search International, EMBase, EMBiology, Gale Academic OneFile, Gale Health Reference Centre, Gale InfoTrac Custom Journals, Illustrata-Natural Science, ProQuest Biological Sciences, ProQuest Natural Sciences, ProQuest SciTech, Pubmed Central, SCOPUS

Journal Directories: EBSCO A-Z, HINARI

Processing Speed: Blind peer review by minimum of two expert reviewers and independent editorial decision within three to four weeks. Publication within average four weeks following acceptance.

ISSN: 1177-6250

H Index: 9 more info

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Hereditary Inclusion Body Myopathy (HIBM2) (Published on 21 Oct 2009)

Download Full Open Access Article in PDF Format (553.57 KB)

Current Status of Monocyte Differentiation-Inducing (MDI) Factors Derived from Human Fetal Membrane Chorion Cells Undergoing Apoptosis after Influenza Virus Infection (Published on 12 Nov 2007)

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Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks (Published on 15 May 2008)

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Systems Biology-Based Identification of Crosstalk between E2F Transcription Factors and the Fanconi Anemia Pathway (Published on 01 May 2007)

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Evaluation of the Role of FGF23 in Mineral Metabolism (Published on 03 Aug 2009)

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Evaluation of Two Outlier-Detection-Based Methods for Detecting Tissue-Selective Genes from Microarray Data (Published on 01 May 2007)

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Ruminant Metabolic Systems Biology: Reconstruction and Integration of Transcriptome Dynamics Underlying Functional Responses of Tissues to Nutrition and Physiological Statea (Published on 25 Jun 2012)

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Identification of cis-Regulatory Elements in the dmyc Gene of Drosophila Melanogaster (Published on 21 Dec 2011)

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Sigma Factors for Cyanobacterial Transcription (Published on 22 Apr 2009)

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Microarray Data Analysis of Gene Expression Evolution (Published on 27 Nov 2009)

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Biology of the Mi-2/NuRD Complex in SLAC (Stemness, Longevity/Ageing, and Cancer) (Published on 27 Feb 2011)

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Post-Transcriptional Control of Chloroplast Gene Expression (Published on 12 Mar 2009)

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Multi-Target Approaches in Colon Cancer Chemoprevention Based on Systems Biology of Tumor Cell-Signaling (Published on 02 May 2008)

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Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA (Published on 30 May 2012)

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RNAi-Mediated Knockdown Showing Impaired Cell Survival in Drosophila Wing Imaginal Disc (Published on 19 Feb 2009)

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An Effective Tri-Clustering Algorithm Combining Expression Data with Gene Regulation Information (Published on 15 Apr 2009)

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MicroRNAs Regulate Osteogenesis and Chondrogenesis of Mouse Bone Marrow Stromal Cells (Published on 22 Apr 2008)

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Role of SP-1 in SDS-Induced Adipose Differentiation Related Protein Synthesis in Human Keratinocytes (Published on 04 Oct 2007)

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Inference of Cancer-specific Gene Regulatory Networks Using Soft Computing Rules (Published on 31 Mar 2010)

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Preclinical Assessment of wt GNE Gene Plasmid for Management of Hereditary Inclusion Body Myopathy 2 (HIBM2) (Published on 20 Jun 2008)

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Letter to the Editor: Does Dicer Expression Affect shRNA Processing? (Published on 19 Jun 2009)

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Evolution and Origin of HRS, a Protein Interacting with Merlin, the Neurofibromatosis 2 Gene Product (Published on 08 Oct 2009)

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Safety and in vivo Expression of a GNE-Transgene: A Novel Treatment Approach for Hereditary Inclusion Body Myopathy-2 (Published on 08 May 2009)

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Application of Petri Nets in Bone Remodeling (Published on 06 Jul 2009)

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Developmental Regulation of Genes Encoding Universal Stress Proteins in Schistosoma mansoni (Published on 19 Sep 2011)

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The Goldfish SG2NA Gene Encodes Two α-Type Regulatory Subunits for PP-2A and Displays Distinct Developmental Expression Pattern (Published on 21 Jul 2009)

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GA-based Design Algorithms for the Robust Synthetic Genetic Oscillators with Prescribed Amplitude, Period and Phase (Published on 24 May 2010)

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Transcriptional Response Of E. coli Upon FimH-mediated Fimbrial Adhesion (Published on 24 Mar 2010)

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The MAPK Signaling Cascade is a Central Hub in the Regulation of Cell Cycle, Apoptosis and Cytoskeleton Remodeling by Tripeptidyl-Peptidase II (Published on 24 Nov 2008)

Download Full Open Access Article in PDF Format (2.82 MB)

Model-Based Analysis of FGF23 Regulation in Chronic Kidney Disease (Published on 09 Jun 2010)

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Omega-6 Fat Supplementation Alters Lipogenic Gene Expression in Bovine Subcutaneous Adipose Tissue (Published on 19 Oct 2010)

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Do DNA Microarrays Tell the Story of Gene Expression? (Published on 29 Jun 2010)

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A Novel Function of Ethylene (Published on 07 Apr 2009)

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Patterns of Stochastic Behavior in Dynamically Unstable High-Dimensional Biochemical Networks (Published on 29 Jan 2009)

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Fractal Topology of Gene Promoter Networks at Phase Transitions (Published on 28 Jul 2010)

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Stochastic Spatio-Temporal Dynamic Model for Gene/Protein Interaction Network in Early Drosophila Development (Published on 19 Oct 2009)

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Calcitriol and TO-901317 Interact in Human Prostate Cancer LNCaP Cells (Published on 17 Mar 2008)

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TAK1 mRNA Expression in the Tumor Tissue of Locally Advanced Head and Neck Cancer Patients (Published on 14 Feb 2008)

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Association of Vascular Endothelial Growth Factor Polymorphisms with Asthma in Tunisian Children (Published on 10 Apr 2008)

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Reconstructing a Network of Stress-Response Regulators via Dynamic System Modeling of Gene Regulation (Published on 10 Feb 2008)

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Systems Biology and Cancer Prevention: All Options on the Table (Published on 10 Oct 2008)

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Molecular Mechanisms of Uterine Leiomyosarcomas: Involvement of Defect in LMP2 Expression (Published on 22 Jul 2008)

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HO1 mRNA and Protein do not Change in Parallel in Bronchial Biopsies of Patients After Long Term Exposure to Sulfur Mustard (Published on 01 Oct 2010)

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Trichoderma Biocontrol: Signal Transduction Pathways Involved in Host Sensing and Mycoparasitism (Published on 08 Nov 2007)

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Advances in Antisense Oligonucleotide Development for Target Identification, Validation, and as Novel Therapeutics (Published on 22 Sep 2008)

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Critical Self-Organized Self-Sustained Oscillations in Large Regulatory Networks: Towards Understanding the Gene Expression Initiation (Published on 22 Mar 2011)

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Characteristics of Transcriptional Activity in Nonlinear Dynamics of Genetic Regulatory Networks (Published on 19 Oct 2009)

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Prostate Cancer Epigenetics: A Review on Gene Regulation (Published on 11 Dec 2007)

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Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases (Published on 04 Nov 2013)

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MicroRNA Expression in Alzheimer Blood Mononuclear Cells (Published on 20 Dec 2007)

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Gene Regulation and Systems Biology

Article Search

Hereditary Inclusion Body Myopathy (HIBM2) (Published on 21 Oct 2009)

Current Status of Monocyte Differentiation-Inducing (MDI) Factors Derived from Human Fetal Membrane Chorion Cells Undergoing Apoptosis after Influenza Virus Infection (Published on 12 Nov 2007)

Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks (Published on 15 May 2008)

Systems Biology-Based Identification of Crosstalk between E2F Transcription Factors and the Fanconi Anemia Pathway (Published on 01 May 2007)

Evaluation of the Role of FGF23 in Mineral Metabolism (Published on 03 Aug 2009)

Evaluation of Two Outlier-Detection-Based Methods for Detecting Tissue-Selective Genes from Microarray Data (Published on 01 May 2007)

Ruminant Metabolic Systems Biology: Reconstruction and Integration of Transcriptome Dynamics Underlying Functional Responses of Tissues to Nutrition and Physiological Statea (Published on 25 Jun 2012)

Identification of cis-Regulatory Elements in the dmyc Gene of Drosophila Melanogaster (Published on 21 Dec 2011)

Sigma Factors for Cyanobacterial Transcription (Published on 22 Apr 2009)

Microarray Data Analysis of Gene Expression Evolution (Published on 27 Nov 2009)

Biology of the Mi-2/NuRD Complex in SLAC (Stemness, Longevity/Ageing, and Cancer) (Published on 27 Feb 2011)

Post-Transcriptional Control of Chloroplast Gene Expression (Published on 12 Mar 2009)

Multi-Target Approaches in Colon Cancer Chemoprevention Based on Systems Biology of Tumor Cell-Signaling (Published on 02 May 2008)

Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA (Published on 30 May 2012)

RNAi-Mediated Knockdown Showing Impaired Cell Survival in Drosophila Wing Imaginal Disc (Published on 19 Feb 2009)

An Effective Tri-Clustering Algorithm Combining Expression Data with Gene Regulation Information (Published on 15 Apr 2009)

MicroRNAs Regulate Osteogenesis and Chondrogenesis of Mouse Bone Marrow Stromal Cells (Published on 22 Apr 2008)

Role of SP-1 in SDS-Induced Adipose Differentiation Related Protein Synthesis in Human Keratinocytes (Published on 04 Oct 2007)

Inference of Cancer-specific Gene Regulatory Networks Using Soft Computing Rules (Published on 31 Mar 2010)

Preclinical Assessment of wt GNE Gene Plasmid for Management of Hereditary Inclusion Body Myopathy 2 (HIBM2) (Published on 20 Jun 2008)

Letter to the Editor: Does Dicer Expression Affect shRNA Processing? (Published on 19 Jun 2009)

Evolution and Origin of HRS, a Protein Interacting with Merlin, the Neurofibromatosis 2 Gene Product (Published on 08 Oct 2009)

Safety and in vivo Expression of a GNE-Transgene: A Novel Treatment Approach for Hereditary Inclusion Body Myopathy-2 (Published on 08 May 2009)

Application of Petri Nets in Bone Remodeling (Published on 06 Jul 2009)

Developmental Regulation of Genes Encoding Universal Stress Proteins in Schistosoma mansoni (Published on 19 Sep 2011)

The Goldfish SG2NA Gene Encodes Two α-Type Regulatory Subunits for PP-2A and Displays Distinct Developmental Expression Pattern (Published on 21 Jul 2009)

GA-based Design Algorithms for the Robust Synthetic Genetic Oscillators with Prescribed Amplitude, Period and Phase (Published on 24 May 2010)

Transcriptional Response Of E. coli Upon FimH-mediated Fimbrial Adhesion (Published on 24 Mar 2010)

The MAPK Signaling Cascade is a Central Hub in the Regulation of Cell Cycle, Apoptosis and Cytoskeleton Remodeling by Tripeptidyl-Peptidase II (Published on 24 Nov 2008)

Model-Based Analysis of FGF23 Regulation in Chronic Kidney Disease (Published on 09 Jun 2010)

Omega-6 Fat Supplementation Alters Lipogenic Gene Expression in Bovine Subcutaneous Adipose Tissue (Published on 19 Oct 2010)

Do DNA Microarrays Tell the Story of Gene Expression? (Published on 29 Jun 2010)

A Novel Function of Ethylene (Published on 07 Apr 2009)

Patterns of Stochastic Behavior in Dynamically Unstable High-Dimensional Biochemical Networks (Published on 29 Jan 2009)

Fractal Topology of Gene Promoter Networks at Phase Transitions (Published on 28 Jul 2010)

Stochastic Spatio-Temporal Dynamic Model for Gene/Protein Interaction Network in Early Drosophila Development (Published on 19 Oct 2009)

Calcitriol and TO-901317 Interact in Human Prostate Cancer LNCaP Cells (Published on 17 Mar 2008)

TAK1 mRNA Expression in the Tumor Tissue of Locally Advanced Head and Neck Cancer Patients (Published on 14 Feb 2008)

Association of Vascular Endothelial Growth Factor Polymorphisms with Asthma in Tunisian Children (Published on 10 Apr 2008)

Reconstructing a Network of Stress-Response Regulators via Dynamic System Modeling of Gene Regulation (Published on 10 Feb 2008)

Systems Biology and Cancer Prevention: All Options on the Table (Published on 10 Oct 2008)

Molecular Mechanisms of Uterine Leiomyosarcomas: Involvement of Defect in LMP2 Expression (Published on 22 Jul 2008)

HO1 mRNA and Protein do not Change in Parallel in Bronchial Biopsies of Patients After Long Term Exposure to Sulfur Mustard (Published on 01 Oct 2010)

Trichoderma Biocontrol: Signal Transduction Pathways Involved in Host Sensing and Mycoparasitism (Published on 08 Nov 2007)

Advances in Antisense Oligonucleotide Development for Target Identification, Validation, and as Novel Therapeutics (Published on 22 Sep 2008)

Critical Self-Organized Self-Sustained Oscillations in Large Regulatory Networks: Towards Understanding the Gene Expression Initiation (Published on 22 Mar 2011)

Characteristics of Transcriptional Activity in Nonlinear Dynamics of Genetic Regulatory Networks (Published on 19 Oct 2009)

Prostate Cancer Epigenetics: A Review on Gene Regulation (Published on 11 Dec 2007)

Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases (Published on 04 Nov 2013)

MicroRNA Expression in Alzheimer Blood Mononuclear Cells (Published on 20 Dec 2007)

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