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Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks

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4252 Article Views

Publication Date: 15 May 2008

Journal: Gene Regulation and Systems Biology

Citation: Gene Regulation and Systems Biology 2008:2 193-201

GRSB journal

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6,654,881 Libertas Article Views

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Dirk Koschützki1,2 and Falk Schreiber1,3

1Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, 06466 Gatersleben, Germany. 2Department of Computer and Electrical Engineering, Furtwangen University of Applied Sciences, Robert-Gerwig-Platz 1, 78120 Furtwangen, Germany. 3Institute for Computer Science, Martin-Luther-University Halle-Wittenberg, Von-Seckendorff-Platz 1, 06120 Halle, Germany.

Abstract

The structural analysis of biological networks includes the ranking of the vertices based on the connection structure of a network. To support this analysis we discuss centrality measures which indicate the importance of vertices, and demonstrate their applicability on a gene regulatory network. We show that common centrality measures result in different valuations of the vertices and that novel measures tailored to specific biological investigations are useful for the analysis of biological networks, in particular gene regulatory networks.


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