Evolutionary Bioinformatics

Phylogenomics-Based Reconstruction of Protozoan Species Tree (7366 Views since 31 Jul 2011)

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Three-Dimensional Structure of Arabidopsis thaliana Lipase Predicted by Homology Modeling Method (8109 Views since 28 Jun 2011)

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Functional Evolution of BRCT Domains from Binding DNA to Protein (6639 Views since 12 Jun 2011)

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How Fitch-Margoliash Algorithm can Benefit from Multi Dimensional Scaling (5568 Views since 07 Jun 2011)

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Structurama: Bayesian Inference of Population Structure (7314 Views since 02 Jun 2011)

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Evolutionary Implications and Physicochemical Analyses of Selected Proteins of Type III Polyketide Synthase Family (7078 Views since 29 May 2011)

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A Monte Carlo Method for Assessing the Quality of Duplication-Aware Alignment Algorithms (4858 Views since 10 May 2011)

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Phylogenetic Analysis of Kindlins Suggests Subfunctionalization of an Ancestral Unduplicated Kindlin into Three Paralogs in Vertebrates (7072 Views since 22 Mar 2011)

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FORS-D Analysis in P. falciparum can Differentiate Classes of Genes Under Selection (7744 Views since 20 Mar 2011)

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SOLiDzipper: A High Speed Encoding Method for the Next-Generation Sequencing Data (7015 Views since 10 Mar 2011)

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Cost-Effective Cloud Computing: A Case Study Using the Comparative Genomics Tool, Roundup (11985 Views since 22 Dec 2010)

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PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences (9053 Views since 16 Dec 2010)

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Where Does the Alignment Score Distribution Shape Come from? (7581 Views since 12 Dec 2010)

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DNA Barcodes of Arabian Partridge and Philby's Rock Partridge: Implications for Phylogeny and Species Identification (9984 Views since 05 Dec 2010)

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Computational Identification of Anthocyanin-Specific Transcription Factors using a Rice Microarray and Maximum Boundary Range Algorithm (7430 Views since 20 Oct 2010)

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EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics (10962 Views since 20 Oct 2010)

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Identifying the Combinatorial Effects of Histone Modifications by Association Rule Mining in Yeast (6635 Views since 20 Sep 2010)

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A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA (7391 Views since 09 Sep 2010)

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Molecular Phylogeny of Edge Hill Virus Supports its Position in the Yellow Fever Virus Group and Identifies a New Genetic Variant (7172 Views since 15 Jun 2010)

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Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference Versus Group-Specific Taxon Sampling (7622 Views since 24 May 2010)

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An Application of Supertree Methods to Mammalian Mitogenomic Sequences (6859 Views since 12 May 2010)

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Relative Codon Adaptation Index, a Sensitive Measure of Codon Usage Bias (8686 Views since 05 May 2010)

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A Comparative Taxonomy of Parallel Algorithms for RNA Secondary Structure Prediction (7486 Views since 09 Apr 2010)

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Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions (8967 Views since 15 Mar 2010)

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Clustering Protein Sequences Using Affinity Propagation Based on an Improved Similarity Measure (7377 Views since 22 Jan 2010)

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Snapshots of Tree Space (7143 Views since 18 Jan 2010)

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Genome-Wide Identification and Evolutionary Analysis of the Animal Specific ETS Transcription Factor Family (7615 Views since 02 Oct 2009)

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A Model for Protein Sequence Evolution Based on Selective Pressure for Protein Stability: Application to Hemoglobins (7196 Views since 27 Aug 2009)

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On the Use of Bootstrapped Topologies in Coalescent-Based Bayesian MCMC Inference: A Comparison of Estimation and Computational Efficiencies (8607 Views since 31 Jul 2009)

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PhyLIS: A Simple GNU/Linux Distribution for Phylogenetics and Phyloinformatics (10196 Views since 30 Jul 2009)

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A Comprehensive Analysis of Gene Expression Evolution Between Humans and Mice (9460 Views since 06 Jul 2009)

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Initial Implementation of a Comparative Data Analysis Ontology (8401 Views since 03 Jul 2009)

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A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies (7649 Views since 25 Jun 2009)

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Phylogenetic Applications of the Minimum Contradiction Approach on Continuous Characters (6808 Views since 11 Jun 2009)

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Phylogenetic Analyses Reveal Monophyletic Origin of the Ergot Alkaloid Gene dmaW in Fungi (7560 Views since 04 Jun 2009)

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Evolution and Functional Diversification of the GLI Family of Transcription Factors in Vertebrates (7104 Views since 18 May 2009)

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REFGEN and TREENAMER: Automated Sequence Data Handling for Phylogenetic Analysis in the Genomic Era (8566 Views since 06 May 2009)

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The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics (11127 Views since 03 Nov 2008)

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Evidence for a Complex Mosaic Genome Pattern in a Full-length Hepatitis C Virus Sequence (5980 Views since 30 Oct 2008)

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Inconsistent Distances in Substitution Matrices can be Avoided by Properly Handling Hydrophobic Residues (5772 Views since 09 Oct 2008)

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Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers (9634 Views since 06 Oct 2008)

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Minimum Contradiction Matrices in Whole Genome Phylogenies (5160 Views since 21 Jul 2008)

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Estimation of Genetic Effects and Genotype-Phenotype Maps (7429 Views since 28 Jun 2008)

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Testing the Accuracy of Eukaryotic Phylogenetic Profiles for Prediction of Biological Function (6568 Views since 18 Jun 2008)

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Electrostatic and Functional Analysis of the Seven-Bladed WD β-Propellers (6044 Views since 13 Jun 2008)

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Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification (17873 Views since 26 May 2008)

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Exploring the Evolutionary History of the Differentially Expressed Genes between Human Populations: Action of Recent Positive Selection (9324 Views since 15 May 2008)

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Maximum Gene-Support Tree (5875 Views since 15 May 2008)

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Examining Ancient Inter-domain Horizontal Gene Transfer (8014 Views since 09 May 2008)

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Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology (5905 Views since 08 May 2008)

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