Gene Regulation and Systems Biology

A Hypothetical Protein of Alteromonas macleodii AltDE1 (amad1_06475) Predicted to be a Cold-Shock Protein with RNA Chaperone Activity (Published on 18 Dec 2014)

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A Comprehensive Profile of ChIP-Seq-Based PU.1/Spi1 Target Genes in Microglia (Published on 08 Dec 2014)

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Endothelin-1 but not Endothelial Nitric Oxide Synthase Gene Polymorphism is Associated with Sickle Cell Disease in Africa (Published on 25 May 2014)

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Species-Specific Regulation of t-PA and PAI-1 Gene Expression in Human and Rat Astrocytes (Published on 08 May 2014)

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Overfeeding Dairy Cattle During Late-Pregnancy Alters Hepatic PPARα-Regulated Pathways Including Hepatokines: Impact on Metabolism and Peripheral Insulin Sensitivity (Published on 03 Apr 2014)

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DNA Conformational Transitions Induced by Supercoiling Control Transcription in Chromatin (Published on 12 Mar 2014)

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Tissue-Specific Gene Expression and Regulation in Liver and Muscle Following Chronic Corticosteroid Administration (Published on 10 Mar 2014)

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Tetracycline Derivative Minocycline Inhibits Autophagy and Inflammation in Concanavalin-A-Activated Human Hepatoma Cells (Published on 04 Mar 2014)

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Discovery of Emphysema Relevant Molecular Networks from an A/J Mouse Inhalation Study Using Reverse Engineering and Forward Simulation (REFS™) (Published on 19 Feb 2014)

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Gene Expression and Gene Ontology Enrichment Analysis for H3K4me3 and H3K4me1 in Mouse Liver and Mouse Embryonic Stem Cell Using ChIP-Seq and RNA-Seq (Published on 20 Jan 2014)

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Central Role of the PPARγ Gene Network in Coordinating Beef Cattle Intramuscular Adipogenesis in Response to Weaning Age and Nutrition (Published on 08 Jan 2014)

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Innate Immunity Interactome Dynamics (Published on 06 Jan 2014)

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Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases (Published on 04 Nov 2013)

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CEBPG Exhibits Allele-Specific Expression in Human Bronchial Epithelial Cells (Published on 04 Jul 2013)

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Dietary Lipid During Late-Pregnancy and Early-Lactation to Manipulate Metabolic and Inflammatory Gene Network Expression in Dairy Cattle Liver with a Focus on PPARs (Published on 11 Jun 2013)

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Investigation of dmyc Promoter and Regulatory Regions (Published on 15 May 2013)

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Yin Yang 1 and Adipogenic Gene Network Expression in Longissimus Muscle of Beef Cattle in Response to Nutritional Management (Published on 16 Apr 2013)

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Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification (Published on 26 Mar 2013)

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A Comprehensive Profile of ChIP-Seq-Based STAT1 Target Genes Suggests the Complexity of STAT1-Mediated Gene Regulatory Mechanisms (Published on 26 Mar 2013)

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Global Consensus Theorem and Self-Organized Criticality: Unifying Principles for Understanding Self-Organization, Swarm Intelligence and Mechanisms of Carcinogenesis (Published on 20 Feb 2013)

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Implications of Systemic Dysfunction for the Etiology of Malignancy (Published on 06 Feb 2013)

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Extensive Ethnogenomic Diversity of Endothelial Nitric Oxide Synthase (eNOS) Polymorphisms (Published on 15 Jan 2013)

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Effects of High Fat Feeding on Liver Gene Expression in Diabetic Goto-Kakizaki Rats (Published on 28 Nov 2012)

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FOXO1 Up-Regulates Human L-selectin Expression Through Binding to a Consensus FOXO1 Motif (Published on 29 Oct 2012)

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A Next-Generation Sequencing Approach to Study the Transcriptomic Changes During the Differentiation of Physarum at the Single-Cell Level (Published on 01 Oct 2012)

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Ruminant Metabolic Systems Biology: Reconstruction and Integration of Transcriptome Dynamics Underlying Functional Responses of Tissues to Nutrition and Physiological Statea (Published on 25 Jun 2012)

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Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA (Published on 30 May 2012)

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Quantification of Transcriptome Responses of the Rumen Epithelium to Butyrate Infusion using RNA-seq Technology (Published on 16 May 2012)

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Unique Sex-Based Approach Identifies Transcriptomic Biomarkers Associated with Non-Syndromic Craniosynostosis (Published on 16 May 2012)

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A Flexible and Qualitatively Stable Model for Cell Cycle Dynamics Including DNA Damage Effects (Published on 11 Apr 2012)

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Regulatory Mechanisms in Bone Following Mechanical Loading (Published on 17 Jan 2012)

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Identification of cis-Regulatory Elements in the dmyc Gene of Drosophila Melanogaster (Published on 21 Dec 2011)

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Alpha-Tocopherol Alters Transcription Activities that Modulates Tumor Necrosis Factor Alpha (TNF-a) Induced Inflammatory Response in Bovine Cells (Published on 05 Dec 2011)

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Biomolecular Self-Defense and Futility of High-Specificity Therapeutic Targeting (Published on 21 Nov 2011)

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Application of Structure Equation Modeling for Inferring a Serial Transcriptional Regulation in Yeast (Published on 10 Nov 2011)

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Developmental Regulation of Genes Encoding Universal Stress Proteins in Schistosoma mansoni (Published on 19 Sep 2011)

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Identification of New SRF Binding Sites in Genes Modulated by SRF Over-Expression in Mouse Hearts (Published on 12 Jul 2011)

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Critical Self-Organized Self-Sustained Oscillations in Large Regulatory Networks: Towards Understanding the Gene Expression Initiation (Published on 22 Mar 2011)

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Biology of the Mi-2/NuRD Complex in SLAC (Stemness, Longevity/Ageing, and Cancer) (Published on 27 Feb 2011)

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Molecular Cloning of the Genes Encoding the PR55/Bβ/δ Regulatory Subunits for PP-2A and Analysis of Their Functions in Regulating Development of Goldfish, Carassius auratus (Published on 20 Dec 2010)

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Identifying a Transcription Factor's Regulatory Targets from its Binding Targets (Published on 08 Dec 2010)

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Alpha-Tocopherol Modulates Transcriptional Activities that Affect Essential Biological Processes in Bovine Cells (Published on 22 Nov 2010)

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Overexpression of Colligin 2 in Glioma Vasculature is Associated with Overexpression of Heat Shock Factor 2 (Published on 20 Oct 2010)

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Omega-6 Fat Supplementation Alters Lipogenic Gene Expression in Bovine Subcutaneous Adipose Tissue (Published on 19 Oct 2010)

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HO1 mRNA and Protein do not Change in Parallel in Bronchial Biopsies of Patients After Long Term Exposure to Sulfur Mustard (Published on 01 Oct 2010)

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Fractal Topology of Gene Promoter Networks at Phase Transitions (Published on 28 Jul 2010)

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Do DNA Microarrays Tell the Story of Gene Expression? (Published on 29 Jun 2010)

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Model-Based Analysis of FGF23 Regulation in Chronic Kidney Disease (Published on 09 Jun 2010)

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GA-based Design Algorithms for the Robust Synthetic Genetic Oscillators with Prescribed Amplitude, Period and Phase (Published on 24 May 2010)

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Inference of Cancer-specific Gene Regulatory Networks Using Soft Computing Rules (Published on 31 Mar 2010)

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