Results 1-67 of 67 for Proteomics

PPCheck: A Webserver for the Quantitative Analysis of Protein–Protein Interfaces and Prediction of Residue Hotspots
Anshul Sukhwal and Ramanathan Sowdhamini
Bioinformatics and Biology Insights 2015:9 141-151
Original Research | Published on 21 Sep 2015

Aberrant Expression of Cyclin D1 in Cancer
Kazushi Inoue and Elizabeth A. Fry
Signal Transduction Insights 2015:4 1-13
Review | Published on 20 Sep 2015

Expression Divergence of Duplicate Genes in the Protein Kinase Superfamily in Pacific Oyster
Dahai Gao, Dennis C. Ko, Xinmin Tian, Guang Yang and Liuyang Wang
Evolutionary Bioinformatics 2015:Suppl. 1 57-65
Review | Published on 13 Sep 2015

tRNA-Derived Short Non-coding RNA as Interacting Partners of Argonaute Proteins
Megumi Shigematsu and Yohei Kirino
Gene Regulation and Systems Biology 2015:9 27-33
Review | Published on 10 Sep 2015

Genomic, Proteomic, and Metabolomic Data Integration Strategies
Kwanjeera Wanichthanarak, Johannes F. Fahrmann and Dmitry Grapov
Biomarker Insights 2015:Suppl. 4 1-6
Review | Published on 07 Sep 2015

A Serum Analysis Before and After Antidepressant Treatment in Major Depression: A Pilot Study
Murielle Girard, Karine Vuilliers-Devillers, Emilie Pinault, Barbara Bessette, Brigitte Plansont and Dominique Malauzat
Clinical Medicine Insights: Psychiatry 2015:6 1-12
Original Research | Published on 15 Jun 2015

A Hypothesis-Directed Approach to the Targeted Development of a Multiplexed Proteomic Biomarker Assay for Cancer
Emily M. Mackay, Jennifer Koppel, Pooja Das, Joanna Woo, David C. Schriemer and Oliver F. Bathe
Cancer Informatics 2015:14 65-70
Technical Advance | Published on 17 May 2015

Roles of Solvent Accessibility and Gene Expression in Modeling Protein Sequence Evolution
Kuangyu Wang, Shuhui Yu, Xiang Ji, Clemens Lakner, Alexander Griffing and Jeffrey L. Thorne
Evolutionary Bioinformatics 2015:11 85-96
Original Research | Published on 29 Apr 2015

Network Analysis of Circular Permutations in Multidomain Proteins Reveals Functional Linkages for Uncharacterized Proteins
Donald Adjeroh, Yue Jiang, Bing-Hua Jiang and Jie Lin
Cancer Informatics 2014:Suppl. 5 109-124
Methodology | Published on 19 Feb 2015

Pathway-based Biomarkers for Breast Cancer in Proteomics
Fan Zhang, Youping Deng, Mu Wang, Li Cui and Renee Drabier
Cancer Informatics 2014:Suppl. 5 101-108
Review | Published on 09 Feb 2015

Prednisolone-Induced Predisposition to Femoral Head Separation and the Accompanying Plasma Protein Changes in Chickens
B Packialakshmi, R Liyanage, JO Lay, Jr, R Okimoto and NC Rath
Biomarker Insights 2015:10 1-8
Original Research | Published on 14 Jan 2015

Role of Galectin-3 in Cancer Metastasis
Joana T. de Oliveira, Cláudia Ribeiro and Fátima Gärtner
Glycobiology Insights 2015:5 1-13
Review | Published on 13 Jan 2015

Computational Analysis Reveals a Successive Adaptation of Multiple Inositol Polyphosphate Phosphatase 1 in Higher Organisms Through Evolution
Surya P. Kilaparty, Awantika Singh, William H. Baltosser and Nawab Ali
Evolutionary Bioinformatics 2014:10 239-250
Original Research | Published on 22 Dec 2014

A Hypothetical Protein of Alteromonas macleodii AltDE1 (amad1_06475) Predicted to be a Cold-Shock Protein with RNA Chaperone Activity
Arafat Rahman Oany, Shah Adil Ishtiyaq Ahmad, KM Kaderi Kibria, Mohammad Uzzal Hossain and Tahmina Pervin Jyoti
Gene Regulation and Systems Biology 2014:8 141-147
Original Research | Published on 18 Dec 2014

Bayesian Hierarchical Models for Protein Networks in Single-Cell Mass Cytometry
Riten Mitra, Peter Müller, Peng Qiu and Yuan Ji
Cancer Informatics 2014:Suppl. 4 79-89
Review | Published on 10 Dec 2014

Genome-wide Analysis of Mycoplasma hominis for the Identification of Putative Therapeutic Targets
Md. Masud Parvege, Monzilur Rahman and Mohammad Shahnoor Hossain
Drug Target Insights 2014:8 51-62
Original Research | Published on 09 Dec 2014

A Comprehensive Comparison of Normalization Methods for Loading Control and Variance Stabilization of Reverse-Phase Protein Array Data
Wenbin Liu, Zhenlin Ju, Yiling Lu, Gordon B. Mills and Rehan Akbani
Cancer Informatics 2014:13 109-117
Original Research | Published on 16 Oct 2014

CSNK1A1 and Gli2 as Novel Targets Identified Through an Integrative Analysis of Gene Expression Data, Protein-Protein Interaction and Pathways Networks in Glioblastoma Tumors: Can These Two Be Antagonistic Proteins?
Seema Mishra
Cancer Informatics 2014:13 93-108
Original Research | Published on 13 Oct 2014

Modeling Signal Transduction from Protein Phosphorylation to Gene Expression
Chunhui Cai, Lujia Chen, Xia Jiang and Xinghua Lu
Cancer Informatics 2014:Suppl. 1 59-67
Review | Published on 13 Oct 2014

Optogenetic Control of Apoptosis in Targeted Tissues of Xenopus laevis Embryos
Kyle Jewhurst, Michael Levin and Kelly A. McLaughlin
Journal of Cell Death 2014:7 25-31
Methodology | Published on 13 Oct 2014

Distinct Mitral Valve Proteomic Profiles in Rheumatic Heart Disease and Myxomatous Degeneration
Carlo de Oliveira Martins, Keity Souza Santos, Frederico Moraes Ferreira, Priscila Camillo Teixeira, Pablo Maria Alberto Pomerantzeff, Carlos M. A. Brandão, Roney Orismar Sampaio, Guilherme S. Spina, Jorge Kalil, Luiza Guilherme, and Edecio Cunha-Neto
Clinical Medicine Insights: Cardiology 2014:8 79-86
Original Research | Published on 27 Aug 2014

Ribosomopathies: Mechanisms of Disease
Hani Nakhoul, Jiangwei Ke, Xiang Zhou, Wenjuan Liao, Shelya X. Zeng and Hua Lu
Clinical Medicine Insights: Blood Disorders 2014:7 7-16
Review | Published on 14 Aug 2014

Innate Immunity Interactome Dynamics
Asmaa Elzawahry, Ashwini Patil, Yutaro Kumagai, Yutaka Suzuki and Kenta Nakai
Gene Regulation and Systems Biology 2014:8 1-15
Original Research | Published on 06 Jan 2014

Proteomic Analysis of Soybean [Glycine max (L.) Merrill] Roots Inoculated with Bradyrhizobium japonicum Strain CPAC 15
Adalgisa R. Torres, Elisete P. Rodrigues, Jesiane S.S. Batista, Douglas F. Gomes and Mariangela Hungria
Proteomics Insights 2013:6 7-11
Original Research | Published on 19 Nov 2013

Protein Expression Dynamics During Postnatal Mouse Brain Development
Annelies Laeremans, Babs Van de Plas, Stefan Clerens, Gert Van den Bergh, Lutgarde Arckens and Tjing-Tjing Hu
Journal of Experimental Neuroscience 2013:7 61-74
Original Research | Published on 06 Oct 2013

The Kynurenine Pathway in Stem Cell Biology
Simon P. Jones, Gilles J. Guillemin and Bruce J. Brew
International Journal of Tryptophan Research 2013:6 57-66
Review | Published on 15 Sep 2013

Identification of Signaling Protein Complexes by Parallel Affinity Precipitation Coupled with Mass Spectrometry
Heng Lu, Qishan Lin and Jihe Zhao
Cell Communication Insights 2013:5 1-7
Methodology | Published on 11 Sep 2013

Identification of Potential Prognostic Markers for Knee Osteoarthritis by Serum Proteomic Analysis
Yoshihiko Takinami, Shinya Yoshimatsu, Takaoki Uchiumi, Tomoko Toyosaki-Maeda, Atsushi Morita, Takeshi Ishihara, Shoji Yamane, Isao Fukuda, Hiroyuki Okamoto, Yoshito Numata and Naoshi Fukui
Biomarker Insights 2013:8 85-95
Original Research | Published on 29 Jul 2013

Association of Putative Members to Family of Mosquito Odorant Binding Proteins: Scoring Scheme Using Fuzzy Functional Templates and Cys Residue Positions
Malini Manoharan, Kannan Sankar, Bernard Offmann and Sowdhamini Ramanathan
Bioinformatics and Biology Insights 2013:7 231-251
Original Research | Published on 22 Jul 2013

Transport of Kynurenic Acid by Rat Organic Anion Transporters rOAT1 and rOAT3: Species Difference between Human and Rat in OAT1
Yuichi Uwai, Hiroaki Hara and Kikuo Iwamoto
International Journal of Tryptophan Research 2013:6 1-6
Original Research | Published on 17 Feb 2013

Mutational Effect of Structural Parameters on Coiled-Coil Stability of Proteins
Amutha Selvaraj Maheshwari, and Govindaraju Archunan
Proteomics Insights 2013:6 1-6
Original Research | Published on 13 Feb 2013

Variants in the Signaling Protein TSAd are Associated with Susceptibility to Ovarian Cancer in BRCA1/2 Negative High Risk Families
Ludmila Kaplun, Aviva Levine Fridman, Wei Chen, Nancy K. Levin, Sidra Ahsan, Nancie Petrucelli, Jennifer L. Barrick, Robin Gold, Susan Land, Michael S. Simon, Robert T. Morris, Adnan R. Munkarah and Michael A. Tainsky
Biomarker Insights 2012:7 151-157
Original Research | Published on 12 Dec 2012

BioNetwork Bench: Database and Software for Storage, Query, and Analysis of Gene and Protein Networks
Oksana Kohutyuk, Fadi Towfic, M. Heather West Greenlee and Vasant Honavar
Bioinformatics and Biology Insights 2012:6 235-246
Software or database review | Published on 08 Nov 2012

Ras-Association Domain Family 1C Protein Enhances Breast Tumor Growth In Vivo
Mark E. Reeves,, Robert J. Aragon,, Mariana Alfakhouri, Shin-Tai Chen, Nancy Lowen, Subburaman Mohan and Yousef G. Amaar,
Cancer Growth and Metastasis 2012:5 27-33
Original Research | Published on 29 Aug 2012

A Survey of Membrane Proteins in Human Serum
Nguyen Tien Dung and Phan Van Chi
Proteomics Insights 2012:5 1-19
Original Research | Published on 03 Apr 2012

Evaluation of Ischemia-Modified Albumin and C-Reactive Protein in Type 2 Diabetics With and Without Ketosis
Shao-gang Ma, Yao Jin, Wen Hu, Feng Bai, Wen Xu and Wei-nan Yu
Biomarker Insights 2012:7 19-26
Original Research | Published on 14 Mar 2012

Construction of a Pig Physical Interactome Using Sequence Homology and a Comprehensive Reference Human Interactome
Felix Dreher, Atanas Kamburov and Ralf Herwig
Evolutionary Bioinformatics 2012:8 119-126
Short Report | Published on 24 Jan 2012

SAFE Software and FED Database to Uncover Protein-Protein Interactions using Gene Fusion Analysis
Dimosthenis Tsagrasoulis, Vasilis Danos,, Maria Kissa, Philip Trimpalis, V. Lila Koumandou, Amalia D. Karagouni, Athanasios Tsakalidis and Sophia Kossida
Evolutionary Bioinformatics 2012:8 47-60
Original Research | Published on 18 Dec 2011

Image Analysis Workflow for 2-D Electrophoresis Gels Based on ImageJ
Massimo Natale,, Bernardetta Maresca, Paolo Abrescia and Enrico M. Bucci,
Proteomics Insights 2011:4 37-49
Technical Advance | Published on 24 Nov 2011

In Vitro Enhanced Sensitivity to Cisplatin in D67Y BRCA1 RING Domain Protein
Apichart Atipairin and Adisorn Ratanaphan
Breast Cancer: Basic and Clinical Research 2011:5 201-208
Short Report | Published on 25 Sep 2011

Developmental Regulation of Genes Encoding Universal Stress Proteins in Schistosoma mansoni
Raphael D. Isokpehi, Ousman Mahmud, Andreas N. Mbah, Shaneka S. Simmons, Lívia Avelar, Rajendram V. Rajnarayanan, Udensi K. Udensi, Wellington K. Ayensu, Hari H. Cohly, Shyretha D. Brown, Centdrika R. Dates, Sonya D. Hentz, Shawntae J. Hughes, Dominique R. Smith-McInnis, Carvey O. Patterson, Jennifer N. Sims, Kelisha T. Turner, Baraka S. Williams, Matilda O. Johnson, Taiwo Adubi, Judith V. Mbuh, Chiaka I. Anumudu, Grace O. Adeoye, Bolaji N. Thomas, Oyekanmi Nashiru and Guilherme Oliveira
Gene Regulation and Systems Biology 2011:5 61-74
Original Research | Published on 19 Sep 2011

Proteomic Studies of Anaplasia in Wilms Tumor
Rong Fan, David Grignon, Erol E. Gulcicek, Philip Faught and Liang Cheng
Proteomics Insights 2011:4 21-35
Original Research | Published on 19 Jul 2011

Analysis of the Membrane Proteins of an Antarctic Bacterium Pseudomonas Syringae
M.V. Jagannadham and S. Saranya
Proteomics Insights 2011:4 13-19
Original Research | Published on 11 May 2011

Analysis of the Membrane Proteins of an Antarctic Bacterium Pseudomonas Syringae
M.V. Jagannadham and S. Saranya
Proteomics Insights 2011:4 13-19
Original Research | Published on 11 May 2011

Genetics Meets Proteomics: Correlating the Portuguese Water Dog Blood Serum Proteome with Genetic Markers
Sandra Sénéchal and Martin Kussmann
Proteomics Insights 2011:4 1-12
Original Research | Published on 22 Mar 2011

Genetics Meets Proteomics: Correlating the Portuguese Water Dog Blood Serum Proteome with Genetic Markers
Sandra Sénéchal and Martin Kussmann
Proteomics Insights 2011:4 1-12
Original Research | Published on 22 Mar 2011

The Expanding Mi-2/NuRD Complexes: A Schematic Glance
Yue Zhang and Yinghua Li
Proteomics Insights 2010:3 79-109
Original Research | Published on 05 Jan 2011 | Highly accessed (previous month)

The Expanding Mi-2/NuRD Complexes: A Schematic Glance
Yue Zhang and Yinghua Li
Proteomics Insights 2010:3 79-109
Original Research | Published on 05 Jan 2011 | Highly accessed (previous month)

How Many Proteins are Missed in Quantitative Proteomics Based on MS/MS Sequencing Methods?
Claire Mulvey, Bettina Thur, Mark Crawford and Jasminka Godovac-Zimmermann
Proteomics Insights 2010:3 61-66
Commentary | Published on 28 Oct 2010

Increased Serum Cu/Zn SOD in Individuals with Bipolar Disorder
A.J. Russo
Proteomics Insights 2010:3 55-60
Original Research | Published on 28 Sep 2010

Low-Grade Inflammation as Trade-Off Causing Chronic Complex Diseases
Hiroyuki Koshiyama
Japanese Clinical Medicine 2010:1 3-4
Editorial | Published on 15 Sep 2010

Introductory Editorial (Japanese Clinical Medicine)
Hiroyuki Koshiyama
Japanese Clinical Medicine, 2010:1,1-2
Editorial | Published on 04 Aug 2010

Small Heat Shock Proteins Produced by Pseudomonas Aeruginosa Clonal Variants Isolated from Diverse Niches
Dinesh Diraviam Sriramulu
Proteomics Insights 2009:2 39-47
Original Research | Published on 03 Dec 2009

Comparison of an Enzyme Immunoassay Versus Mass Spectrometry-based Assay for the Quantitative Determination of the Procollagen Type I N-terminal Propeptide in Rat Serum
Monika Dzieciatkowska, Marci Copeland, Jinsam You, Jean-Pierre Wery and Mu Wang
Proteomics Insights 2009:2 33-38
Original Research | Published on 02 Dec 2009

An Optimal Protocol to Analyze the Rat Spinal Cord Proteome
F. Gil-Dones, S. Alonso-Orgaz, G. Avila, T. Martin-Rojas, V. Moral-Darde, G. Barroso, F. Vivanco, J. Scott-Taylor and M.G. Barderas
Biomarker Insights 2009:4 135-164
Methodology | Published on 28 Oct 2009

Identifying the Sequence and Distinguishing the Oxidized—Methionine from Phenylalanine Peptides by MALDI TOF/TOF Mass Spectrometry in an Antarctic Bacterium Pseudomonas Syringae
M. V. Jagannadham
Proteomics Insights 2009:2 27-31
Short Commentary | Published on 01 Oct 2009

Prospects for Proteomics Directed Genomic and Genetic Analyses in Disease Discoveries
Sanjoy K. Bhattacharya
Proteomics Insights 2009:2 23-26
Commentary | Published on 25 Sep 2009

Oxidation of an Adjacent Methionine Residue Inhibits Regulatory Seryl-Phosphorylation of Pyruvate Dehydrogenase
Jan A. Miernyk, Mark L. Johnston, Steve C. Huber, Alejandro Tovar-Méndez, Elizabeth Hoyos and Douglas D. Randall
Proteomics Insights 2009:2 15-22
Original Research | Published on 22 Jul 2009

AIM-BLAST-AJAX Interfaced Multisequence Blast
G. Aravindhan, R. Sathish Kumar, K. Subha, T.K.Subazini, Alpana Dey, Krishna Kant and G. Ramesh Kumar
Proteomics Insights 2009:2 9-13
Published on 24 Mar 2009

AJAX Interface: A Breakthrough in Bioinformatics Web Applications
G. Aravindhan, G. Ramesh Kumar, R. Sathish Kumar and K. Subha
Proteomics Insights 2009:2 1-7

Published on 23 Mar 2009

Bioinformatics as a Tool for Assessing the Quality of Sub-Cellular Proteomic Strategies and Inferring Functions of Proteins: Plant Cell Wall Proteomics as a Test Case
Hélène San Clemente, Rafael Pont-Lezica and Elisabeth Jamet
Bioinformatics and Biology Insights 2009:3 15-28
Original Research | Published on 18 Feb 2009

Bioinformatics as a Tool for Assessing the Quality of Sub-Cellular Proteomic Strategies and Inferring Functions of Proteins: Plant Cell Wall Proteomics as a Test Case
Hélène San Clemente, Rafael Pont-Lezica and Elisabeth Jamet
Bioinformatics and Biology Insights 2009:3 15-28
Original Research | Published on 18 Feb 2009

Vesicular Trans-Cell Wall Transport in Fungi: A Mechanism for the Delivery of Virulence-Associated Macromolecules?
Marcio L. Rodrigues, Leonardo Nimrichter, Debora L. Oliveira, Joshua D. Nosanchuk and Arturo Casadevall
Lipids Insights 2008:2 27-40
Published on 25 Aug 2008

Proteomics Discovery of Disease Biomarkers
Mamoun Ahram and Emanuel F. Petricoin
Biomarker Insights 2008:3 325-333
Published on 06 Jun 2008

Use of Proteomics Analysis for Molecular Precision Approaches in Cancer Therapy
Yuqiao Shen, Neil N. Senzer and John J. Nemunaitis
Drug Target Insights 2008:3 55-66
Published on 23 Apr 2008

Comparison of a Label-Free Quantitative Proteomic Method Based on Peptide Ion Current Area to the Isotope Coded Affinity Tag Method
Soyoung Ryu, Byron Gallis, Young Ah Goo, Scott A. Shaffer, Dragan Radulovic, David R. Goodlett
Cancer Informatics 2008:6 243-255
Published on 17 Apr 2008

Introductory Editorial (Proteomics Insights)
Hassan Dihazi
Proteomics Insights 2008:1 1
Published on 27 Mar 2008