Results 500-550 of 790 for Bioinformatics

Discrimination of Carcinogens by Hepatic Transcript Profiling in Rats Following 28-day Administration
Hiroshi Matsumoto, Yoshikuni Yakabe, Koichi Saito, Kayo Sumida, Masaru Sekijima, Koji Nakayama, Hideki Miyaura, Fumiyo Saito, Masanori Otsuka and Tomoyuki Shirai
Cancer Informatics 2009:7 253-269
Original Research | Published on 13 Nov 2009

Using the Multiple Analysis Approach to Reconstruct Phylogenetic Relationships among Planktonic Foraminifera from Highly Divergent and Length-polymorphic SSU rDNA Sequences
Ralf Aurahs, Markus Göker, Guido W. Grimm, Vera Hemleben, Christoph Hemleben, Ralf Schiebel and Michal Kučera
Bioinformatics and Biology Insights 2009:3 155-177
Methodology | Published on 11 Nov 2009

Using the Multiple Analysis Approach to Reconstruct Phylogenetic Relationships among Planktonic Foraminifera from Highly Divergent and Length-polymorphic SSU rDNA Sequences
Ralf Aurahs, Markus Göker, Guido W. Grimm, Vera Hemleben, Christoph Hemleben, Ralf Schiebel and Michal Kučera
Bioinformatics and Biology Insights 2009:3 155-177
Methodology | Published on 11 Nov 2009

Classifying Coding DNA with Nucleotide Statistics
Nicolas Carels and Diego Frías
Bioinformatics and Biology Insights 2009:3 141-154
Original Research | Published on 28 Oct 2009

Introduction of Hypermatrix and Operator Notation into a Discrete Mathematics Simulation Model of Malignant Tumour Response to Therapeutic Schemes In Vivo. Some Operator Properties
Georgios S. Stamatakos and Dimitra D. Dionysiou
Cancer Informatics 2009:7 239-251
Original Research | Published on 21 Oct 2009

Inferring Transcriptional Interactions by the Optimal Integration of ChIP-chip and Knock-out Data
Haoyu Cheng, Lihua Jiang, Maoying Wu and Qi Liu
Bioinformatics and Biology Insights 2009:3 129-140
Original Research | Published on 21 Oct 2009

Introductory Editorial (Biomedical Engineering and Computational Biology)
Kayvan Najarian
Biomedical Engineering and Computational Biology, 2009:1, 1-2
Editorial | Published on 15 Oct 2009

A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome
Marcin Kierczak, Krzysztof Ginalski, Michał Dramiński, Jacek Koronacki, Witold Rudnicki and Jan Komorowski
Bioinformatics and Biology Insights 2009:3 109-127
Original Research | Published on 05 Oct 2009

A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome
Marcin Kierczak, Krzysztof Ginalski, Michał Dramiński, Jacek Koronacki, Witold Rudnicki and Jan Komorowski
Bioinformatics and Biology Insights 2009:3 109-127
Original Research | Published on 05 Oct 2009

Graphical User Interfaces for Molecular Dynamics—Quo Vadis?
B. Knapp and W. Schreiner
Bioinformatics and Biology Insights 2009:3 103-107
Short Commentary | Published on 23 Sep 2009

Gromita: A Fully Integrated Graphical User Interface to Gromacs 4
Diamantis Sellis, Dimitrios Vlachakis and Metaxia Vlassi
Bioinformatics and Biology Insights 2009:3 99-102
Software or Database Review | Published on 07 Sep 2009

Gene Expression Based Leukemia Sub‑Classification Using Committee Neural Networks
Mihir S. Sewak, Narender P. Reddy and Zhong-Hui Duan
Bioinformatics and Biology Insights 2009:3 89-98
Methodology | Published on 03 Sep 2009

Unblocking Blockbusters: Using Boolean Text-Mining to Optimise Clinical Trial Design and Timeline for Novel Anticancer Drugs
Richard J. Epstein
Cancer Informatics 2009:7 231-238

Original Research | Published on 17 Aug 2009

New Advanced Technologies to Provide Decentralised  and Secure Access to Medical Records: Case Studies  in Oncology
Catherine Quantin, Gouenou Coatrieux, François André Allaert, Maniane Fassa, Karima Bourquard, Jean-Yves Boire, Paul de Vlieger, Lydia Maigne and Vincent Breton
Cancer Informatics 2009:7 217-229
Case Report | Published on 07 Aug 2009

The Bimodality Index: A Criterion for Discovering  and Ranking Bimodal Signatures from Cancer Gene Expression Profiling Data
Jing Wang, Sijin Wen, W. Fraser Symmans, Lajos Pusztai and Kevin R. Coombes
Cancer Informatics 2009:7 199-216
Original Research | Published on 05 Aug 2009

A Generalized Beta Model for the Age Distribution of Cancers: Application to Pancreatic and Kidney Cancer
Tengiz Mdzinarishvili, Michael X. Gleason, Leo Kinarsky and Simon Sherman
Cancer Informatics 2009:7 183-197
Original Research | Published on 04 Aug 2009

affyPara - a Bioconductor Package for Parallelized Preprocessing Algorithms of Affymetrix Microarray Data
Markus Schmidberger, Esmeralda Vicedo and Ulrich Mansmann
Bioinformatics and Biology Insights 2009:3 83-87
Short Report | Published on 22 Jul 2009

Linguistic Processing and Classification of Semi Structured Bibliographic Data on Complementary Medicine
Thomas Ostermann, Christa K. Raak, Peter F. Matthiessen, Arndt Büssing and Hartmut Zillmann
Cancer Informatics 2009:7 159-169

Review | Published on 06 Jul 2009

Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences
Surendra S Negi and Werner Braun
Bioinformatics and Biology Insights 2009:3 71-81
Original Research | Published on 01 Jul 2009

Robust Model Selection for Classification of Microarrays
Ikumi Suzuki, Takashi Takenouchi, Miki Ohira, Shigeyuki Oba and Shin Ishii
Cancer Informatics 2009:7 141-157
Original Research | Published on 25 Jun 2009

Personalizing Drug Selection Using Advanced Clinical Decision Support
John Pestian, Malik Spencer, Pawel Matykiewicz, Kejian Zhang, Sander Vinks and Tracy Glauser
Biomedical Informatics Insights 2009:2 19-29
Case Report | Published on 23 Jun 2009

Integration of Neuroimaging and Microarray Datasets  through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes
Spiro P. Pantazatos, Jianrong Li, Paul Pavlidis and Yves A. Lussier
Cancer Informatics 2009:8 75-94
Original Research | Published on 08 Jun 2009

Sequence Analysis of the Full-length cDNA and Protein Structure Homology Modeling of FABP2 from Paralichthys Olivaceus
Xiaowu Chen and Zhiyi Shi
Bioinformatics and Biology Insights 2009:3 29-35
Short Report | Published on 04 Jun 2009

Predicting Consensus Structures for RNA Alignments Via Pseudo-Energy Minimization
Junilda Spirollari, Jason T.L. Wang, Kaizhong Zhang, Vivian Bellofatto, Yongkyu Park and Bruce A. Shapiro
Bioinformatics and Biology Insights 2009:3 51-69
Original Research | Published on 03 Jun 2009

Universal Features for the Classification of Coding and Non-Coding DNA Sequences
Nicolas Carels, Ramon Vidal and Diego Frías
Bioinformatics and Biology Insights 2009:3 37-49
Original Research | Published on 03 Jun 2009

Microarray-Based Cancer Prediction Using Soft Computing Approach
Xiaosheng Wang and Osamu Gotoh
Cancer Informatics 2009:7 123-139
Original Research | Published on 26 May 2009

Using Semantic Web Technologies to Annotate and Align Microarray Designs
Sebastian Szpakowski, James McCusker and Michael Krauthammer
Cancer Informatics 2009:8 65-73
Methodology | Published on 13 May 2009

Estrogen Exposure, Metabolism, and Enzyme Variants in a Model for Breast Cancer Risk Prediction
Fritz F. Parl, Kathleen M. Egan, Chun Li and Philip S. Crooke
Cancer Informatics 2009:7 109-121
Original Research | Published on 05 May 2009

Dedication: Joan Elaine Althouse Weiler
James Lyons-Weiler
Cancer Informatics 2009:7 105-107
Dedication | Published on 30 Apr 2009

Development of the Lymphoma Enterprise Architecture Database: A caBIG(TM) Silver Level Compliant System
Taoying Huang, Pareen J. Shenoy, Rajni Sinha, Michael Graiser, Kevin W. Bumpers and Christopher R. Flowers
Cancer Informatics 2009:8 45-64
Published on 03 Apr 2009

Avoiding Pitfalls in the Statistical Analysis of Heterogeneous Tumors
David E. Axelrod, Naomi Miller and Judith-Anne W. Chapman
Biomedical Informatics Insights 2009:2 11-18
Published on 30 Mar 2009

Combining Chromosomal Arm Status and Significantly Aberrant Genomic Locations Reveals New Cancer Subtypes
Tal Shay, Wanyu L. Lambiv, Anat Reiner-Benaim, Monika E. Hegi and Eytan Domany
Cancer Informatics 2009:7 91-104
Methodology | Published on 12 Mar 2009

An Algorithm for Identifying Novel Targets of Transcription Factor Families: Application to Hypoxia-inducible Factor 1 Targets
Yue Jiang, Bojan Cukic, Donald A. Adjeroh, Heath D. Skinner, Jie Lin, Qingxi J. Shen and Bing-Hua Jiang
Cancer Informatics 2009:7 75-89
Original research | Published on 04 Mar 2009

Use of Gene Expression Profiles of Peripheral Blood Lymphocytes to Distinguish BRCA1 Mutation Carriers in High Risk Breast Cancer Families
Marie-Laure Vuillaume, Nancy Uhrhammer, Véronique Vidal, Valérie Sylvain Vidal, Valérie Chabaud, Beline Jesson, Fabrice Kwiatkowski and Yves-Jean Bignon
Cancer Informatics 2009:7 41-56
Published on 02 Mar 2009

Bioinformatics as a Tool for Assessing the Quality of Sub-Cellular Proteomic Strategies and Inferring Functions of Proteins: Plant Cell Wall Proteomics as a Test Case
Hélène San Clemente, Rafael Pont-Lezica and Elisabeth Jamet
Bioinformatics and Biology Insights 2009:3 15-28
Original Research | Published on 18 Feb 2009

Bioinformatics as a Tool for Assessing the Quality of Sub-Cellular Proteomic Strategies and Inferring Functions of Proteins: Plant Cell Wall Proteomics as a Test Case
Hélène San Clemente, Rafael Pont-Lezica and Elisabeth Jamet
Bioinformatics and Biology Insights 2009:3 15-28
Original Research | Published on 18 Feb 2009

A Novel Information Retrieval Model for High-Throughput Molecular Medicine Modalities
Firas H. Wehbe, Steven H. Brown, Pierre P. Massion, Cynthia S. Gadd, Daniel R. Masys and Constantin F. Aliferis
Cancer Informatics 2009:8 1-17
Methodology | Published on 09 Feb 2009

Control Design for Signal Transduction Networks
Chun-Liang Lin, Yuan-Wei Liu and Chia-Hua Chuang
Bioinformatics and Biology Insights 2009:3 1-14
Original Research | Published on 09 Feb 2009

Staging of Prostate Cancer Using Automatic Feature Selection, Sampling and Dempster-Shafer Fusion
Sandeep Chandana, Henry Leung and Kiril Trpkov
Cancer Informatics 2009:7 57-73
Original research | Published on 03 Feb 2009

Semantic Integration of Cervical Cancer Data Repositories to Facilitate Multicenter Association Studies: The ASSIST Approach
Theodoros Agorastos, Vassilis Koutkias, Manolis Falelakis, Irini Lekka, Themistoklis Mikos, Anastasios Delopoulos, Pericles A. Mitkas, Antonios Tantsis, Steven Weyers, Pascal Coorevits, Andreas M. Kaufmann, Roberto Kurzeja and Nicos Maglaveras
Cancer Informatics 2009:8 31-44
Original research | Published on 03 Feb 2009

Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data
Matthew E. Holford, Haseena Rajeevan, Hongyu Zhao, Kenneth K. Kidd and Kei-Hoi Cheung
Cancer Informatics 2009:8 19-30
Methodology | Published on 15 Jan 2009

Quantitative Assessment of Tissue Biomarkers and Construction of a Model to Predict Outcome in Breast Cancer Using Multiple Imputation
John W. Emerson, Marisa Dolled-Filhart, Lyndsay Harris, David L. Rimm and David P. Tuck
Cancer Informatics 2009:7 29-40
Original research | Published on 23 Dec 2008

Applications of Microarray Technology to Acute Myelogenous Leukemia
Rashmi S. Goswami, Mahadeo A. Sukhai, Mariam Thomas, Patricia P. Reis and Suzanne Kamel-Reid
Cancer Informatics 2009:7 13-28
Review | Published on 22 Dec 2008

Simulation of Different Truncated p16INK4a Forms and In Silico Study of Interaction with Cdk4
Najmeh Fahham, Mohammad Hossein Ghahremani, Soroush Sardari, Behrouz Vaziri and Seyed Nasser Ostad
Cancer Informatics 2009:7 1-11
Original research | Published on 03 Dec 2008

Identification of the RGG Box Motif in Shadoo: RNA-Binding and Signaling Roles?
Susan M. Corley and Jill E. Gready
Bioinformatics and Biology Insights 2008:2 383-400
Published on 19 Nov 2008

Modeling and Analyzing Gene Co-Expression in Hepatocellular Carcinoma Using Actor-Semiotic Networks and Centrality Signatures
David C.Y. Fung
Cancer Informatics 2008:6 463-474
Published on 05 Nov 2008

Identification and Investigation of Drosophila  Postsynaptic Density Homologs
Faith L.W. Liebl and David E. Featherstone
Bioinformatics and Biology Insights 2008:2 369-381
Published on 03 Nov 2008

IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites
R. Casilli, A. Marongiu, S. Melchionna, P. Palazzari, R. Paparcone and V. Rosato
Bioinformatics and Biology Insights 2008:2 357-367
Published on 03 Oct 2008

Gene Copy Number Analysis for Family Data Using Semiparametric Copula Model
Ao Yuan, Guanjie Chen, Zhong-Cheng Zhou, George Bonney and Charles Rotimi
Bioinformatics and Biology Insights 2008:2 343-355

Published on 26 Sep 2008

An Analysis Pipeline for Genome-wide Association Studies
Stefan Stefanov, James Lautenberger and Bert Gold
Cancer Informatics 2008:6 455-461
Published on 24 Sep 2008