Posted Mon, Nov, 25,2013
Published today in Evolutionary Bioinformatics is a new technical advance article by Emanuel Maldonado, Imran Khan, Siby Philip, Vítor Vasconcelos and Agostinho Antunes. Read more about this paper below:
Title
Ensembl Easy Sequence Retriever
Abstract
The rapid advances in genome sequencing technologies have increased the pace at which biological sequence databases are becoming available to the broad scientific community. Thus, obtaining and preparing an appropriate sequence dataset is a crucial first step for all types of genomic analyses. Here, we present a script that can widely facilitate the easy, fast, and effortless downloading and preparation of a proper biological sequence dataset for various genomics studies. This script retrieves Ensembl defined genomic features, associated with a given Ensembl identifier. Coding (CDS) and genomic sequences can be easily retrieved based on a selected relationship from a set of relationship types, either considering all available organisms or a user specified subset of organisms. The script is very user-friendly and by default starts with an interactive mode if no command-line options are specified.
Click here to learn more about the article, download it and comment
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Thu 08 Oct, 2015
Published This Week (5th - 9th October)Thu 08 Oct, 2015
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Interview with Professor Jamie DaviesI had a great experience publishing a research article in Nutrition and Metabolic Insights. The editorial team is very helpful with regular updates at each step of the review process. The speed of the review process and the quality of the reviews were high. I would recommend this journal to anyone wishing to publish manuscripts.
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