Proteomics Insights
Synopsis: An open access, peer reviewed electronic journal that covers proteomics.
Indexing: Indexed by OAIster. Pubmed indexing for NIH-funded research.
Processing time: Decision in 2 weeks for 90% of papers.
Visibility: Most popular article read 400+ times.
Articles published in this journal at no charge for a limited time. Learn more and register here.
AIM-BLAST-AJAX Interfaced Multisequence Blast
G. Aravindhan1, R. Sathish Kumar2, K. Subha1, T.K.Subazini1, Alpana Dey3, Krishna Kant3 and G. Ramesh Kumar1
1Bioinformatics Division, AU-KBC Research Centre, MIT Campus, Anna University, Chennai—600 044, India. 2NRCFOSS, AU-KBC Research Centre, MIT Campus, Anna University, Chennai—600 044, India. 3Ministry of Communications and Information Technology, DT, New Delhi-110 003, India.
Abstract
AIM-BLAST, AJAX Interfaced Multisequence Blast, is a simplified tool developed to facilitate the multiple sequences blast using AJAX as an interface. This tool has been integrated with the SOAP services of EBI NCBI Blast and the functionality of AJAX (Asynchronous Javascript and XML), so as to minimize the enormous bandwidth consumption while carrying out blast analysis for many sequences at an instance. Although a few tools for multiple sequences blast are already available online, they are restricted only to a limited number of genomes and consume several bytes of data transfer for receiving the results. Further, AIM-BLAST also has enhanced features for automated parsing of the Blast results of individual sequence and presenting them as “one sequence-one function” manner. This will save the users time and effort in interpreting the bulky blast results to identify one suitable hit. The results of the blast search in this tool are displayed in an easily interpretable table format that makes the tool user-friendly too. Hence this tool, with a laconic framework, will remain a well structured, flexible and a highly controlled Blast Program for investigating numerous sequences at a stretch with the consumption of reduced level of data transfer.
Availability: AIM-BLAST is freely available at http://biotool.nrcfosshelpline.in/aimblast/
- 01/Oct/2009
Prospects for Proteomics Directed Genomic and Genetic Analyses in Disease Discoveries
- 25/Sep/2009
Oxidation of an Adjacent Methionine Residue Inhibits Regulatory Seryl-Phosphorylation of Pyruvate Dehydrogenase
- 22/Jul/2009
AIM-BLAST-AJAX Interfaced Multisequence Blast
- 24/Mar/2009
AJAX Interface: A Breakthrough in Bioinformatics Web Applications
- 23/Mar/2009
Introductory Editorial (Proteomics Insights)
- 27/Mar/2008
Proteomics Insights
Hassan Dihazi , Editor in Chief
Submit a paper
 |
|
 |
YAHOO! BUZZ |
 |
DIGG |
 |
|
 |
MIXX |
 |
PERMALINK |
 |
GOOGLE BOOKMARKS |
 |
DELICIOUS |
 |
|
 |
NEWSVINE |
Announcing the Indian Journal of Clinical Medicine - 30/Sep/2009
Autism Insights launched - 29/Sep/2009
Newsletter summary (week 37, 2009) - 25/Sep/2009
Interview with Clinical Medicine: Cardiology editorial board member Dr Vernon Barnes - 25/Sep/2009
Interview with Cancer Informatics editorial board member Dr Grant Izmirlian - 22/Sep/2009
Call for papers for Analytical Chemistry Insights from Dr Gabor Patonay - 22/Sep/2009
Sponsor the IBM-OCI Integrative Discovery team in Ride to Conquer Cancer - 15/Sep/2009
No article processing fees for selected journals - 25/Sep/2009
Newsletter summary (week 36, 2009) - 15/Sep/2009
Interview with Healthy Aging and Clinical Care in the Elderly editorial board member Dr Davide Malatesta - 15/Sep/2009
Interview with Translational Oncogenomics author Dr David Frank - 10/Sep/2009
Interview with Retrovirology: Research and Treatment author Dr Elcio Leal - 10/Sep/2009
Interview with Microbiology Insights author Dr Tinatin Doolotkedlieva - 10/Sep/2009
Call for papers for Drug Target Insights by Dr Monica Milani - 10/Sep/2009
Call for papers for Clinical Medicine: Urology from Dr Xiangyi Lu - 10/Sep/2009
Research profile on Gene Regulation and Systems Biology author Dr Noboru Uchide - 09/Sep/2009
Interview with Biomarker Insights editorial board member Dr Lawrence Cheskin - 07/Sep/2009
Newsletter summary (week 35, 2009) - 04/Sep/2009
Research profile of Clinical Medicine: Endocrinology and Diabetes author Dr Hiro Koshiyama - 04/Sep/2009
Gene Expression Analysis of Four Radiation-resistant Bacteria - 16/Jun/2009
Low serum Alpha-1 Antitrypsin Associated with Anti-PR-3 AncA in Autistic Children with GI Disease - 04/Jun/2009
DNA in Amphibian and Reptile Venom Permits Access to Genomes Without Specimen Sacrifice - 03/Dec/2008
Association of HMGA2 Gene Variation with Height in Specific Pediatric Age Categories - 11/Sep/2008
Toxicogenomic Analysis of Cardiotoxicity in Rats - 18/Jun/2008
Introductory Editorial (Genomics Insights) - 04/Mar/2008