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Cancer Informatics

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Editor in Chief: J. T. Efird

Indexing & Databases: Pubmed, Directory of Open Access Journals, EBSCO Academic Search International, EMBase, Gale Academic OneFile, Gale Health Reference Centre, Gale InfoTrac Custom Journals, Illustrata-Natural Science, ProQuest Biological Sciences, ProQuest Natural Sciences, ProQuest SciTech, ProQuest Technology, Pubmed Central, SCOPUS

Journal Directories: EBSCO A-Z, HINARI

Processing Speed: Blind peer review by minimum of two expert reviewers and independent editorial decision within three to four weeks. Publication within average four weeks following acceptance.

ISSN: 1176-9351

H Index: 17 more info

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Inferring the Effects of Honokiol on the Notch Signaling Pathway in SW480 Colon Cancer Cells (Published on 13 Oct 2014)

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RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment (Published on 13 Oct 2014)

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Combined Benefit of Prediction and Treatment: A Criterion for Evaluating Clinical Prediction Models (Published on 05 Oct 2014)

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Bayesian Disease Classification Using Copy Number Data (Published on 01 Oct 2014)

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Introductory Editorial: Classification, Predictive Modelling, and Statistical Analysis of Cancer Data (A) (Published on 21 Sep 2014)

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Functional Annotation of Putative Regulatory Elements at Cancer Susceptibility Loci (Published on 21 Sep 2014)

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A Review of Cancer Risk Prediction Models with Genetic Variants (Published on 21 Sep 2014)

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A Bayesian Integrative Model for Genetical Genomics with Spatially Informed Variable Selection (Published on 21 Sep 2014)

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Integrative Bayesian Network Analysis of Genomic Data (Published on 21 Sep 2014)

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Integrated Analysis of Whole-Genome Paired-End and Mate-Pair Sequencing Data for Identifying Genomic Structural Variations in Multiple Myeloma (Published on 21 Sep 2014)

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Comparative Study of Computational Methods for Reconstructing Genetic Networks of Cancer-Related Pathways (Published on 21 Sep 2014)

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Review of Current Methods, Applications, and Data Management for the Bioinformatics Analysis of Whole Exome Sequencing (Published on 21 Sep 2014)

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Integrative Pathway Analysis Using Graph-Based Learning with Applications to TCGA Colon and Ovarian Data (Published on 28 Jul 2014)

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On the Significance of Fuzzification of the N and M in Cancer Staging (Published on 24 Jul 2014)

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Modeling the Altered Expression Levels of Genes on Signaling Pathways in Tumors As Causal Bayesian Networks (Published on 25 May 2014)

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Nonlinear Optical Microscopy Signal Processing Strategies in Cancer (Published on 02 Apr 2014)

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INsPeCT: INtegrative Platform for Cancer Transcriptomics (Published on 12 Mar 2014)

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A New Method for Predicting Patient Survivorship Using Efficient Bayesian Network Learning (Published on 13 Feb 2014)

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Evaluating Gene Set Enrichment Analysis Via a Hybrid Data Model (Published on 12 Feb 2014)

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Prognostic features of signal transducer and activator of transcription 3 in an ER(+) breast cancer model system (Published on 21 Jan 2014)

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OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data (Published on 16 Jan 2014)

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stepwiseCM: An R Package for Stepwise Classification of Cancer Samples Using Multiple Heterogeneous Data Sets (Published on 02 Jan 2014)

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Are the Somatic Mutation and Tissue Organization Field Theories of Carcinogenesis Incompatible? (Published on 01 Dec 2013)

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Gene Expression Meta-Analysis Identifies Cytokine Pathways and 5q Aberrations Involved in Metastasis of ERBB2 Amplified and Basal Breast Cancer (Published on 25 Nov 2013)

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Monitoring of Technical Variation in Quantitative High-Throughput Datasets (Published on 23 Sep 2013)

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Comprehensive Assessment and Network Analysis of the Emerging Genetic Susceptibility Landscape of Prostate Cancer (Published on 28 Aug 2013)

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Analysis of Patterns of Gene Expression Variation within and between Ethnic Populations in Pediatric B-ALL (Published on 27 Aug 2013)

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Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification (Published on 04 Aug 2013)

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Novel Integrative Genomics Approach for Associating GWAS Information with Intrinsic Subtypes of Breast Cancer (Published on 15 May 2013)

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Dealing with Diversity in Computational Cancer Modeling (Published on 07 May 2013)

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Prognostic Estimator of Survival for Patients with Localized and Extended Pancreatic Ductal Adenocarcinoma (Published on 18 Mar 2013)

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An Empirical Evaluation of Normalization Methods for MicroRNA Arrays in a Liposarcoma Study (Published on 18 Mar 2013)

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Basic Equations and Computing Procedures for Frailty Modeling of Carcinogenesis: Application to Pancreatic Cancer Data (Published on 18 Feb 2013)

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In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers (Published on 13 Feb 2013)

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Classification of Tumor Samples from Expression Data Using Decision Trunks (Published on 13 Feb 2013)

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Design of an Expert System for Mitigating Trace Element Toxicity in Cancer Risk Management (Published on 04 Feb 2013)

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An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer (Published on 29 Jan 2013)

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Prediction of Breast Cancer Metastasis by Gene Expression Profiles: A Comparison of Metagenes and Single Genes (Published on 10 Dec 2012)

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Mapping the Future—Merging the Old with the New Across Disciplines (Published on 26 Nov 2012)

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Newton, Laplace, and The Epistemology of Systems Biology (Published on 30 Oct 2012)

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Significance Analysis of Microarrays (SAM) Offers Clues to Differences Between the Genomes of Adult Philadelphia Positive ALL and the Lymphoid Blast Transformation of CML (Published on 12 Sep 2012)

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Haploinsufficiency of Tumor Suppressor Genes is Driven by the Cumulative Effect of microRNAs, microRNA Binding Site Polymorphisms and microRNA Polymorphisms: An In silico Approach (Published on 29 Aug 2012)

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TNBCtype: A Subtyping Tool for Triple-Negative Breast Cancer (Published on 24 Jul 2012)

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Identification of a Gene Expression Signature Common to Distinct Cancer Pathways (Published on 08 May 2012)

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In Silico Prediction for Regulation of Transcription Factors onTheir Shared Target Genes Indicates Relevant Clinical Implications in a Breast Cancer Population (Published on 19 Apr 2012)

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Major Functional Transcriptome of an Inferred Center Regulator of an ER(-) Breast Cancer Model System (Published on 19 Apr 2012)

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Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots (Published on 11 Apr 2012)

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Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature (Published on 12 Mar 2012)

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A Systems Biology Approach in Therapeutic Response Study for Different Dosing Regimens—a Modeling Study of Drug Effects on Tumor Growth using Hybrid Systems (Published on 27 Feb 2012)

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Gene Selection using a High-Dimensional Regression Model with Microarrays in Cancer Prognostic Studies (Published on 27 Feb 2012)

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This is the first time for us to submit a manuscript to Cancer Informatics. We thank the peer reviewers for their insightful comments, which have improved our manuscript markedly. We were pleased to find that the staff were extremely helpful and kept us informed of the progress of the submission step-by-step. Our experience with Cancer Informatics has been tremendous. Thank you very much!

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Expression Levels of Genes on Signaling Pathways as Bayesian Networks

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Article Search

Inferring the Effects of Honokiol on the Notch Signaling Pathway in SW480 Colon Cancer Cells (Published on 13 Oct 2014)

RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment (Published on 13 Oct 2014)

Combined Benefit of Prediction and Treatment: A Criterion for Evaluating Clinical Prediction Models (Published on 05 Oct 2014)

Bayesian Disease Classification Using Copy Number Data (Published on 01 Oct 2014)

Introductory Editorial: Classification, Predictive Modelling, and Statistical Analysis of Cancer Data (A) (Published on 21 Sep 2014)

Functional Annotation of Putative Regulatory Elements at Cancer Susceptibility Loci (Published on 21 Sep 2014)

A Review of Cancer Risk Prediction Models with Genetic Variants (Published on 21 Sep 2014)

A Bayesian Integrative Model for Genetical Genomics with Spatially Informed Variable Selection (Published on 21 Sep 2014)

Integrative Bayesian Network Analysis of Genomic Data (Published on 21 Sep 2014)

Integrated Analysis of Whole-Genome Paired-End and Mate-Pair Sequencing Data for Identifying Genomic Structural Variations in Multiple Myeloma (Published on 21 Sep 2014)

Comparative Study of Computational Methods for Reconstructing Genetic Networks of Cancer-Related Pathways (Published on 21 Sep 2014)

Review of Current Methods, Applications, and Data Management for the Bioinformatics Analysis of Whole Exome Sequencing (Published on 21 Sep 2014)

Integrative Pathway Analysis Using Graph-Based Learning with Applications to TCGA Colon and Ovarian Data (Published on 28 Jul 2014)

On the Significance of Fuzzification of the N and M in Cancer Staging (Published on 24 Jul 2014)

Modeling the Altered Expression Levels of Genes on Signaling Pathways in Tumors As Causal Bayesian Networks (Published on 25 May 2014)

Nonlinear Optical Microscopy Signal Processing Strategies in Cancer (Published on 02 Apr 2014)

INsPeCT: INtegrative Platform for Cancer Transcriptomics (Published on 12 Mar 2014)

A New Method for Predicting Patient Survivorship Using Efficient Bayesian Network Learning (Published on 13 Feb 2014)

Evaluating Gene Set Enrichment Analysis Via a Hybrid Data Model (Published on 12 Feb 2014)

Prognostic features of signal transducer and activator of transcription 3 in an ER(+) breast cancer model system (Published on 21 Jan 2014)

OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data (Published on 16 Jan 2014)

stepwiseCM: An R Package for Stepwise Classification of Cancer Samples Using Multiple Heterogeneous Data Sets (Published on 02 Jan 2014)

Are the Somatic Mutation and Tissue Organization Field Theories of Carcinogenesis Incompatible? (Published on 01 Dec 2013)

Gene Expression Meta-Analysis Identifies Cytokine Pathways and 5q Aberrations Involved in Metastasis of ERBB2 Amplified and Basal Breast Cancer (Published on 25 Nov 2013)

Monitoring of Technical Variation in Quantitative High-Throughput Datasets (Published on 23 Sep 2013)

Comprehensive Assessment and Network Analysis of the Emerging Genetic Susceptibility Landscape of Prostate Cancer (Published on 28 Aug 2013)

Analysis of Patterns of Gene Expression Variation within and between Ethnic Populations in Pediatric B-ALL (Published on 27 Aug 2013)

Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification (Published on 04 Aug 2013)

Novel Integrative Genomics Approach for Associating GWAS Information with Intrinsic Subtypes of Breast Cancer (Published on 15 May 2013)

Dealing with Diversity in Computational Cancer Modeling (Published on 07 May 2013)

Prognostic Estimator of Survival for Patients with Localized and Extended Pancreatic Ductal Adenocarcinoma (Published on 18 Mar 2013)

An Empirical Evaluation of Normalization Methods for MicroRNA Arrays in a Liposarcoma Study (Published on 18 Mar 2013)

Basic Equations and Computing Procedures for Frailty Modeling of Carcinogenesis: Application to Pancreatic Cancer Data (Published on 18 Feb 2013)

In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers (Published on 13 Feb 2013)

Classification of Tumor Samples from Expression Data Using Decision Trunks (Published on 13 Feb 2013)

Design of an Expert System for Mitigating Trace Element Toxicity in Cancer Risk Management (Published on 04 Feb 2013)

An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer (Published on 29 Jan 2013)

Prediction of Breast Cancer Metastasis by Gene Expression Profiles: A Comparison of Metagenes and Single Genes (Published on 10 Dec 2012)

Mapping the Future—Merging the Old with the New Across Disciplines (Published on 26 Nov 2012)

Newton, Laplace, and The Epistemology of Systems Biology (Published on 30 Oct 2012)

Significance Analysis of Microarrays (SAM) Offers Clues to Differences Between the Genomes of Adult Philadelphia Positive ALL and the Lymphoid Blast Transformation of CML (Published on 12 Sep 2012)

Haploinsufficiency of Tumor Suppressor Genes is Driven by the Cumulative Effect of microRNAs, microRNA Binding Site Polymorphisms and microRNA Polymorphisms: An In silico Approach (Published on 29 Aug 2012)

TNBCtype: A Subtyping Tool for Triple-Negative Breast Cancer (Published on 24 Jul 2012)

Identification of a Gene Expression Signature Common to Distinct Cancer Pathways (Published on 08 May 2012)

In Silico Prediction for Regulation of Transcription Factors onTheir Shared Target Genes Indicates Relevant Clinical Implications in a Breast Cancer Population (Published on 19 Apr 2012)

Major Functional Transcriptome of an Inferred Center Regulator of an ER(-) Breast Cancer Model System (Published on 19 Apr 2012)

Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots (Published on 11 Apr 2012)

Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature (Published on 12 Mar 2012)

A Systems Biology Approach in Therapeutic Response Study for Different Dosing Regimens—a Modeling Study of Drug Effects on Tumor Growth using Hybrid Systems (Published on 27 Feb 2012)

Gene Selection using a High-Dimensional Regression Model with Microarrays in Cancer Prognostic Studies (Published on 27 Feb 2012)

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