Results 400-450 of 790 for Bioinformatics

EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data
Benjamin Linard, Ngoc Hoan Nguyen, Francisco Prosdocimi, Olivier Poch and Julie D. Thompson
Evolutionary Bioinformatics 2012:8 61-77
Original Research | Published on 21 Dec 2011

Linear Discriminant Functions in Connection with the micro-RNA Diagnosis of Colon Cancer
Jason B. Nikas and Walter C. Low
Cancer Informatics 2012:11 1-14
Original Research | Published on 20 Dec 2011

SAFE Software and FED Database to Uncover Protein-Protein Interactions using Gene Fusion Analysis
Dimosthenis Tsagrasoulis, Vasilis Danos,, Maria Kissa, Philip Trimpalis, V. Lila Koumandou, Amalia D. Karagouni, Athanasios Tsakalidis and Sophia Kossida
Evolutionary Bioinformatics 2012:8 47-60
Original Research | Published on 18 Dec 2011

LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes
Dapeng Wang, Yubin Zhang, Zhonghua Fan, Guiming Liu and Jun Yu
Evolutionary Bioinformatics 2012:8 39-46
Original Research | Published on 13 Dec 2011

Species Delimitation and Global Biosecurity
Laura M. Boykin, Karen F. Armstrong, Laura Kubatko and Paul De Barro
Evolutionary Bioinformatics 2012:8 1-37
Original Research | Published on 08 Dec 2011 | Video abstract

Image Analysis Workflow for 2-D Electrophoresis Gels Based on ImageJ
Massimo Natale,, Bernardetta Maresca, Paolo Abrescia and Enrico M. Bucci,
Proteomics Insights 2011:4 37-49
Technical Advance | Published on 24 Nov 2011

Factors Affecting Synonymous Codon Usage Bias in Chloroplast Genome of Oncidium Gower Ramsey
Chen Xu, Xiaoning Cai, Quanzhan Chen, Hongxia Zhou, Yao Cai and Ailing Ben
Evolutionary Bioinformatics 2011:7 271-278
Original Research | Published on 14 Nov 2011

ColorPhylo: A Color Code to Accurately Display Taxonomic Classifications
Sylvain Lespinats and Bernard Fertil
Evolutionary Bioinformatics 2011:7 257-270
Original Research | Published on 13 Nov 2011

In Silico Prediction of Evolutionarily Conserved GC-Rich Elements Associated with Antigenic Proteins of Plasmodium falciparum
Porkodi Panneerselvam, Praveen Bawankar, Surashree Kulkarni, and Swati Patankar
Evolutionary Bioinformatics 2011:7 235-255
Original Research | Published on 10 Nov 2011

Visual Analytics of Surveillance Data on Foodborne Vibriosis, United States, 1973–2010
Jennifer N. Sims, Raphael D. Isokpehi, Gabrielle A. Cooper, Michael P. Bass, Shyretha D. Brown, Alison L. St. John, Paul A. Gulig and Hari H.P. Cohly
Environmental Health Insights 2011:5 71-85
Original Research | Published on 10 Nov 2011

On the Interplay between the Evolvability and Network Robustness in an Evolutionary Biological Network: A Systems Biology Approach
Bor-Sen Chen and Ying-Po Lin
Evolutionary Bioinformatics 2011:7 201-233
Original Research | Published on 01 Nov 2011

New Short Term Prediction Method for Chemical Carcinogenicity by Hepatic Transcript Profiling Following 28-Day Toxicity Tests in Rats
Hiroshi Matsumoto, Yoshikuni Yakabe, Fumiyo Saito, Koichi Saito, Kayo Sumida, Masaru Sekijima, Koji Nakayama, Hideki Miyaura, Masanori Otsuka and Tomoyuki Shirai
Cancer Informatics 2011:10 259-271
Original Research | Published on 27 Oct 2011

Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations
Hongmei Jiang, Zhong-Zheng Zhu, Yue Yu, Simon Lin and Lifang Hou
Cancer Informatics 2011:10 249-258
Methodology | Published on 19 Oct 2011

Characterization and Inference of Gene Gain/Loss Along Burkholderia Evolutionary History
Bo Zhu, Shengli Zhou, Miaomiao Lou, Jun Zhu, Bin Li, Guanlin Xie, GuLei Jin, and René De Mot
Evolutionary Bioinformatics 2011:7 191-200
Original Research | Published on 18 Oct 2011

Profiles and Majority Voting-Based Ensemble Method for Protein Secondary Structure Prediction
Hafida Bouziane, Belhadri Messabih and Abdallah Chouarfia
Evolutionary Bioinformatics 2011:7 171-189
Original Research | Published on 10 Oct 2011

A Novel Model for DNA Sequence Similarity Analysis Based on Graph Theory
Xingqin Qi, Qin Wu, Yusen Zhang, Eddie Fuller and Cun-Quan Zhang
Evolutionary Bioinformatics 2011:7 149-158
Original Research | Published on 04 Oct 2011

A New Support Measure to Quantify the Impact of Local Optima in Phylogenetic Analyses
Grant Brammer, Seung-Jin Sul and Tiffani L. Williams
Evolutionary Bioinformatics 2011:7 159-170
Original Research | Published on 29 Sep 2011

Functional Annotation Analytics of Rhodopseudomonas palustris Genomes
Shaneka S. Simmons, Raphael D. Isokpehi, Shyretha D. Brown, Donee L. McAllister, Charnia C. Hall, Wanaki M. McDuffy, Tamara L. Medley, Udensi K. Udensi, Rajendram V. Rajnarayanan, Wellington K. Ayensu and Hari H.P. Cohly
Bioinformatics and Biology Insights 2011:5 115-129
Original Research | Published on 21 Sep 2011

Single-Domain Parvulins Constitute a Specific Marker for Recently Proposed Deep-Branching Archaeal Subgroups
Christoph Lederer, Dominik Heider, Johannes van den Boom, Daniel Hoffmann, Jonathan W. Mueller and Peter Bayer
Evolutionary Bioinformatics 2011:7 135-148
Original Research | Published on 19 Sep 2011

Cellular Imaging Using Equivalent Cross-Relaxation Rate Technique in Rabbit VX-2 Tumor Model
Hideyuki Nishiofuku, Shigeru Matsushima, Osamu Taguchi, Yoshitaka Inaba, Hidekazu Yamaura, Yozo Sato, Toshihiro Tanaka and Kimihiko Kichikawa
Cancer Informatics 2011:10 227-232
Original Research | Published on 31 Aug 2011

Multicenter Breast Cancer Collaborative Registry
Simon Sherman, Oleg Shats, Elizabeth Fleissner, George Bascom, Kevin Yiee, Mehmet Copur, Kate Crow, James Rooney, Zubeena Mateen, Marsha A. Ketcham, Jianmin Feng, Alexander Sherman, Michael Gleason, Leo Kinarsky, Edibaldo Silva-Lopez, James Edney, Elizabeth Reed, Ann Berger and Kenneth Cowan
Cancer Informatics 2011:10 217-226
Methodology | Published on 31 Aug 2011

IONS: Identification of Orthologs by Neighborhood and Similarity—an Automated Method to Identify Orthologs in Chromosomal Regions of Common Evolutionary Ancestry and its Application to Hemiascomycetous Yeasts
Marie-Line Seret and Philippe V. Baret
Evolutionary Bioinformatics 2011:7 123-133
Methodology | Published on 30 Aug 2011

On Differential Gene Expression Using RNA-Seq Data
Juhee Lee, Yuan Ji, Shoudan Liang, Guoshuai Cai and Peter Müller
Cancer Informatics 2011:10 205-215
Methodology | Published on 01 Aug 2011

Phylogenomics-Based Reconstruction of Protozoan Species Tree
Kary A.C.S. Ocaña, and Alberto M.R. Dávila
Evolutionary Bioinformatics 2011:7 107-121
Original Research | Published on 31 Jul 2011

An Integrative Genomics Approach to Biomarker Discovery in Breast Cancer
Chindo Hicks, Rozana Asfour, Antonio Pannuti and Lucio Miele
Cancer Informatics 2011:10 185-204
Original Research | Published on 25 Jul 2011

Modelling the Molecular Transportation of Subcutaneously Injected Salubrinal
Andy Chen, Ping Zhang, Zhiyao Duan, Guofeng Wang and Hiroki Yokota
Biomedical Engineering and Computational Biology 2011:3 25-32
Original Research | Published on 25 Jul 2011

Support Vector Machine Based Classification Model for Screening Plasmodium falciparum Proliferation Inhibitors and Non-Inhibitors
Sangeetha Subramaniam, Monica Mehrotra and Dinesh Gupta
Biomedical Engineering and Computational Biology 2011:3 13-24
Methodology | Published on 07 Jul 2011

Three-Dimensional Structure of Arabidopsis thaliana Lipase Predicted by Homology Modeling Method
Abdelmonaem Messaoudi, Hatem Belguith and Jeannette Ben Hamida
Evolutionary Bioinformatics 2011:7 99-105
Original Research | Published on 28 Jun 2011

Functional Evolution of BRCT Domains from Binding DNA to Protein
Zi-Zhang Sheng, Yu-Qi Zhao, and Jing-Fei Huang
Evolutionary Bioinformatics 2011:7 87-97
Original Research | Published on 12 Jun 2011

How Fitch-Margoliash Algorithm can Benefit from Multi Dimensional Scaling
Sylvain Lespinats, Delphine Grando, Eric Maréchal, Mohamed-Ali Hakimi, Olivier Tenaillon and Olivier Bastien
Evolutionary Bioinformatics 2011:7 61-85
Original Research | Published on 07 Jun 2011

Metagenes Associated with Survival in Non-Small Cell Lung Cancer
Egon Urgard, Tõnu Vooder, Urmo Võsa, Kristjan Välk, Mingming Liu, Cheng Luo, Fabian Hoti, Retlav Roosipuu, Tarmo Annilo, Jukka Laine, Christopher M. Frenz, Liqing Zhang and Andres Metspalu
Cancer Informatics 2011:10 175-183
Original Research | Published on 02 Jun 2011

Structurama: Bayesian Inference of Population Structure
John P. Huelsenbeck, Peter Andolfatto and Edna T. Huelsenbeck
Evolutionary Bioinformatics 2011:7 55-59
Short Report | Published on 02 Jun 2011

Evolutionary Implications and Physicochemical Analyses of Selected Proteins of Type III Polyketide Synthase Family
V. Mallika, K.C. Sivakumar and E.V. Soniya
Evolutionary Bioinformatics 2011:7 41-53
Original Research | Published on 29 May 2011

Model-Integrated Estimation of Normal Tissue Contamination for Cancer SNP Allelic Copy Number Data
Susann Stjernqvist, Tobias Rydén and Chris D. Greenman
Cancer Informatics 2011:10 159-173
Original Research | Published on 25 May 2011

Mouse Retinal Development: a Dark Horse Model for Systems Biology Research
Xia Zhang, Jeanne M. Serb and M. Heather West Greenlee
Bioinformatics and Biology Insights 2011:5 99-113
Review | Published on 22 May 2011

Mouse Retinal Development: a Dark Horse Model for Systems Biology Research
Xia Zhang, Jeanne M. Serb and M. Heather West Greenlee
Bioinformatics and Biology Insights 2011:5 99-113
Review | Published on 22 May 2011

A Monte Carlo Method for Assessing the Quality of Duplication-Aware Alignment Algorithms
Valerio Freschi and Alessandro Bogliolo
Evolutionary Bioinformatics 2011:7 31-40
Original Research | Published on 10 May 2011

GENT: Gene Expression Database of Normal and Tumor Tissues
Gwangsik Shin, Tae-Wook Kang, Sungjin Yang, Su-Jin Baek, Yong-Su Jeong and Seon-Young Kim
Cancer Informatics 2011:10 149-157
Database Review | Published on 09 May 2011

Gene Networks Driving Bovine Mammary Protein Synthesis During the Lactation Cycle
Massimo Bionaz and Juan J. Loor
Bioinformatics and Biology Insights 2011:5 83-98
Original Research | Published on 04 May 2011

Gene Networks Driving Bovine Mammary Protein Synthesis During the Lactation Cycle
Massimo Bionaz and Juan J. Loor
Bioinformatics and Biology Insights 2011:5 83-98
Original Research | Published on 04 May 2011

A Jackknife and Voting Classifier Approach to Feature Selection and Classification
Sandra L. Taylor and Kyoungmi Kim
Cancer Informatics 2011:10 133-147
Methodology | Published on 27 Apr 2011

Comparison of LDA and SPRT on Clinical Dataset Classifications
Chih Lee, Brittany Nkounkou and Chun-Hsi Huang
Biomedical Informatics Insights 2011:4 1-7
Original Research | Published on 19 Apr 2011

Bioinformatic Prediction of Ultraviolet Light Mutagenesis Sensitivity of Human Genes and a Method for Genetically Engineering UVB Resistance
Kevin A. Lease and Chris Papageorgio
Cancer Informatics 2011:10 121-131
Short Report | Published on 18 Apr 2011

Bioinformatic Prediction of Ultraviolet Light Mutagenesis Sensitivity of Human Genes and a Method for Genetically Engineering UVB Resistance
Kevin A. Lease and Chris Papageorgio
Cancer Informatics 2011:10 121-131
Short Report | Published on 18 Apr 2011

A Comparison of Methods for Data-Driven Cancer Outlier Discovery, and An Application Scheme to Semisupervised Predictive Biomarker Discovery
Seppo Karrila, Julian Hock Ean Lee and Greg Tucker-Kellogg
Cancer Informatics 2011:10 109-120
Original Research | Published on 18 Apr 2011

A Comparison of Methods for Data-Driven Cancer Outlier Discovery, and An Application Scheme to Semisupervised Predictive Biomarker Discovery
Seppo Karrila, Julian Hock Ean Lee and Greg Tucker-Kellogg
Cancer Informatics 2011:10 109-120
Original Research | Published on 18 Apr 2011

Amino Acid Features of P1B-ATPase Heavy Metal Transporters Enabling Small Numbers of Organisms to Cope with Heavy Metal Pollution
E. Ashrafi, A. Alemzadeh, M. Ebrahimi, E. Ebrahimie, N. Dadkhodaei and M. Ebrahimi
Bioinformatics and Biology Insights 2011:5 59-82
Original Research | Published on 17 Apr 2011

Associating GWAS Information with the Notch Signaling Pathway Using Transcription Profiling
Chindo Hicks, Antonio Pannuti and Lucio Miele
Cancer Informatics 2011:10 93-108
Original Research | Published on 06 Apr 2011

Associating GWAS Information with the Notch Signaling Pathway Using Transcription Profiling
Chindo Hicks, Antonio Pannuti and Lucio Miele
Cancer Informatics 2011:10 93-108
Original Research | Published on 06 Apr 2011

PCCR: Pancreatic Cancer Collaborative Registry
Simon Sherman, Oleg Shats, Marsha A. Ketcham, Michelle A. Anderson, David C. Whitcomb, Henry T. Lynch, Paola Ghiorzo, Wendy S. Rubinstein, Aaron R. Sasson, William E. Grizzle, Gleb Haynatzki, Jianmin Feng, Alexander Sherman, Leo Kinarsky and Randall E. Brand
Cancer Informatics 2011:10 83-91
Original Research | Published on 23 Mar 2011