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Bioinformatics

Range of open access peer reviewed Bioinformatics journals & associated research articles. Read full text articles or submit your research for publishing


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Results 350-400 of 790 for Bioinformatics

Evolution of the RALF Gene Family in Plants: Gene Duplication and Selection Patterns
Jun Cao, and Feng Shi
Evolutionary Bioinformatics 2012:8 271-292
Original Research | Published on 11 Jun 2012



The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes
André E.R. Soares and Carlos G. Schrago
Bioinformatics and Biology Insights 2012:6 129-143
Original Research | Published on 31 May 2012



Mitochondrial Genetic Differentiation of Spirlin (Actinopterigii: Cyprinidae) in the South Caspian Sea basin of Iran
Mahvash Seifali, Aziz Arshad, Faezeh Yazdani Moghaddam, Hamid Reza Esmaeili, Bahram H. Kiabi, Siti Khalijah Daud and Mansour Aliabadian
Evolutionary Bioinformatics 2012:8 219-227
Original Research | Published on 21 May 2012



Impact of the Partitioning Scheme on Divergence Times Inferred from Mammalian Genomic Data Sets
Carolina M. Voloch and Carlos G. Schrago
Evolutionary Bioinformatics 2012:8 207-218
Original Research | Published on 14 May 2012



Identification of a Gene Expression Signature Common to Distinct Cancer Pathways
Niklaus Fankhauser, Igor Cima, Peter Wild, and Wilhelm Krek
Cancer Informatics 2012:11 139-146
Original Research | Published on 08 May 2012



Different Evolutionary Modifications as a Guide to Rewire Two-Component Systems
Beate Krueger, Torben Friedrich, Frank Förster, Jörg Bernhardt, Roy Gross and Thomas Dandekar
Bioinformatics and Biology Insights 2012:6 97-128
Original Research | Published on 03 May 2012



Efficient Feature Selection and Multiclass Classification with Integrated Instance and Model Based Learning
Zhenqiu Liu, Halima Bensmail and Ming Tan
Evolutionary Bioinformatics 2012:8 197-205
Methodology | Published on 30 Apr 2012



Promoter Sequences Prediction Using Relational Association Rule Mining
Gabriela Czibula, Maria-Iuliana Bocicor and Istvan Gergely Czibula
Evolutionary Bioinformatics 2012:8 181-196
Original Research | Published on 23 Apr 2012



Transcriptome Analysis in Tardigrade Species Reveals Specific Molecular Pathways for Stress Adaptations
Frank Förster, Daniela Beisser, Markus A. Grohme, Chunguang Liang, Brahim Mali, Alexander Matthias Siegl, Julia C. Engelmann, Alexander V. Shkumatov, Elham Schokraie, Tobias Müller, Martina Schnölzer, Ralph O. Schill, Marcus Frohme and Thomas Dandekar
Bioinformatics and Biology Insights 2012:6 69-96
Original Research | Published on 23 Apr 2012



In Silico Prediction for Regulation of Transcription Factors onTheir Shared Target Genes Indicates Relevant Clinical Implications in a Breast Cancer Population
Li-Yu D Liu, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Ming-Kwang Shyu, King-Jen Chang and Fon-Jou Hsieh
Cancer Informatics 2012:11 113-137
Methodology | Published on 19 Apr 2012



Major Functional Transcriptome of an Inferred Center Regulator of an ER(-) Breast Cancer Model System
Li-Yu Daisy Liu, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Yi-Shing Lin, Shiu-Feng Huang, Chiung-Nien Chen, King-Jen Chang, Fon-Jou Hsieh
Cancer Informatics 2012:11 87-111
Rapid Communication | Published on 19 Apr 2012



Mining Gene Ontology Data with AGENDA
Guvanch Ovezmyradov, Qianhao Lu and Martin C. Göpfert
Bioinformatics and Biology Insights 2012:6 63-67
Original Research | Published on 18 Apr 2012



Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots
E. Shannon Neeley, Keith A. Baggerly and Steven M. Kornblau
Cancer Informatics 2012:11 77-86
Original Research | Published on 11 Apr 2012



White Blood Cell Differentials Enrich Whole Blood Expression Data in the Context of Acute Cardiac Allograft Rejection
Casey P. Shannon, Zsuzsanna Hollander,Janet Wilson-McManus, Robert Balshaw, Raymond T. Ng, Robert McMaster, Bruce M. McManus, Paul A. Keown, and Scott J. Tebbutt
Bioinformatics and Biology Insights 2012:6 49-61
Original Research | Published on 10 Apr 2012



A Lossy Compression Technique Enabling Duplication-Aware Sequence Alignment
Valerio Freschi and Alessandro Bogliolo
Evolutionary Bioinformatics 2012:8 171-180
Original Research | Published on 02 Apr 2012



Molecular Modelling of Oligomeric States of DmOR83b, an Olfactory Receptor in D. melanogaster
K. Harini and R. Sowdhamini
Bioinformatics and Biology Insights 2012:6 33-47
Original Research | Published on 26 Mar 2012



Selection of Marker Genes Using Whole-Genome DNA Polymorphism Analysis
Harry M. Bohle and Toni Gabaldón
Evolutionary Bioinformatics 2012:8 161-169
Methodology | Published on 19 Mar 2012



easyPAC: A Tool for Fast Prediction, Testing and Reference Mapping of Degenerate PCR Primers from Alignments or Consensus Sequences
David Rosenkranz
Evolutionary Bioinformatics 2012:8 151-159
Software or database review | Published on 14 Mar 2012 | Video abstract



Inferring the Phylogeny of Bovidae Using Mitochondrial DNA Sequences: Resolving Power of Individual Genes Relative to Complete Genomes
Ibrahim A. Arif, Mohammad A. Bakir and Haseeb A. Khan
Evolutionary Bioinformatics 2012:8 139-150
Original Research | Published on 20 Feb 2012



Computational Design of Targeted Inhibitors of Polo-Like Kinase 1 (Plk1)
Krupa S. Jani and D.S. Dalafave
Bioinformatics and Biology Insights 2012:6 23-31
Original Research | Published on 20 Feb 2012



Structural and Functional Insights on the Myosin Superfamily
Divya P. Syamaladevi, James A. Spudich,* and R. Sowdhamini*
Bioinformatics and Biology Insights 2012:6 11-21
Review | Published on 01 Feb 2012



Statistical and Similarity Methods for Classifying Emotion in Suicide Notes
Kirk Roberts and Sanda M. Harabagiu
Biomedical Informatics Insights 2012:5 (Suppl. 1) 195-204
Original Research | Published on 30 Jan 2012



Rule-based and Lightly Supervised Methods to Predict Emotions in Suicide Notes
Ted Pedersen
Biomedical Informatics Insights 2012:5 (Suppl. 1) 185-193
Original Research | Published on 30 Jan 2012



Three Hybrid Classifiers for the Detection of Emotions in Suicide Notes
Maria Liakata, Jee-Hyub Kim, Shyamasree Saha, Janna Hastings, and Dietrich Rebholz-Schuhmann
Biomedical Informatics Insights 2012:5 (Suppl. 1) 175-184
Original Research | Published on 30 Jan 2012



Binary Classifiers and Latent Sequence Models for Emotion Detection in Suicide Notes
Colin Cherry, Saif M. Mohammad and Berry de Bruijn
Biomedical Informatics Insights 2012:5 (Suppl. 1) 147-154
Original Research | Published on 30 Jan 2012



Discovering Fine-grained Sentiment in Suicide Notes
Wenbo Wang, Lu Chen, Ming Tan, Shaojun Wang and Amit P. Sheth
Biomedical Informatics Insights 2012:5 (Suppl. 1) 137-145
Original Research | Published on 30 Jan 2012



Early Fusion of Low Level Features for Emotion Mining
Fabon Dzogang, Marie-Jeanne Lesot, Maria Rifqi, and Bernadette Bouchon-Meunier
Biomedical Informatics Insights 2012:5 (Suppl. 1) 129-136
Original Research | Published on 30 Jan 2012



A Hybrid System for Emotion Extraction from Suicide Notes
Azadeh Nikfarjam, Ehsan Emadzadeh and Graciela Gonzalez
Biomedical Informatics Insights 2012:5 (Suppl. 1) 165-174
Original Research | Published on 30 Jan 2012



Leveraging Psycholinguistic Resources and Emotional Sequence Models for Suicide Note Emotion Annotation
Eric Yeh, William Jarrold and Joshua Jordan
Biomedical Informatics Insights 2012:5 (Suppl. 1) 155-163
Original Research | Published on 30 Jan 2012



Combining Lexico-semantic Features for Emotion Classification in Suicide Notes
Bart Desmet, and Véronique Hoste
Biomedical Informatics Insights 2012:5 (Suppl. 1) 125-128
Original Research | Published on 30 Jan 2012



Introductory Editorial
John P. Pestian
Biomedical Informatics Insights 2012:5 (Suppl. 1) 1
Editorial | Published on 30 Jan 2012



Sentiment Analysis of Suicide Notes: A Shared Task
John P. Pestian, Pawel Matykiewicz, Michelle Linn-Gust, Brett South, Ozlem Uzuner, Jan Wiebe, Kevin B. Cohen, John Hurdle, Christopher Brew
Biomedical Informatics Insights 2012:5 (Suppl. 1) 3-16
Original Research | Published on 30 Jan 2012



A Hybrid Model for Automatic Emotion Recognition in Suicide Notes
Hui Yang, Alistair Willis, Anne de Roeck and Bashar Nuseibeh,
Biomedical Informatics Insights 2012:5 (Suppl. 1) 17-30
Original Research | Published on 30 Jan 2012



Suicide Note Sentiment Classification: A Supervised Approach Augmented by Web Data
Yan Xu, Yue Wang,, Jiahua Liu, Zhuowen Tu, Jian-Tao Sun, Junichi Tsujii and Eric Chang
Biomedical Informatics Insights 2012:5 (Suppl. 1) 31-41
Original Research | Published on 30 Jan 2012



A Hybrid Approach to Sentiment Sentence Classification in Suicide Notes
Sunghwan Sohn, Manabu Torii, Dingcheng Li, Kavishwar Wagholikar, Stephen Wu and Hongfang Liu
Biomedical Informatics Insights 2012:5 (Suppl. 1) 43-50
Original Research | Published on 30 Jan 2012



Emotion Detection in Suicide Notes using Maximum Entropy Classification
Richard Wicentowski and Matthew R. Sydes
Biomedical Informatics Insights 2012:5 (Suppl. 1) 51-60
Original Research | Published on 30 Jan 2012



Fine-Grained Emotion Detection in Suicide Notes: A Thresholding Approach to Multi-Label Classification
Kim Luyckx, Frederik Vaassen, Claudia Peersman and Walter Daelemans
Biomedical Informatics Insights 2012:5 (Suppl. 1) 61-69
Original Research | Published on 30 Jan 2012



LASSA: Emotion Detection via Information Fusion
Ning Yu, Sandra Kübler, Joshua Herring, Yu-Yin Hsu, Ross Israel and Charese Smiley
Biomedical Informatics Insights 2012:5 (Suppl. 1) 71-76
Original Research | Published on 30 Jan 2012



Using Ensemble Models to Classify the Sentiment Expressed in Suicide Notes
James A. McCart, Dezon K. Finch, Jay Jarman, Edward Hickling, Jason D. Lind, Matthew R. Richardson, Donald J. Berndt and Stephen L. Luther
Biomedical Informatics Insights 2012:5 (Suppl. 1) 77-85
Original Research | Published on 30 Jan 2012



A Naïve Bayes Approach to Classifying Topics in Suicide Notes
Irena Spasic, Pete Burnap, Mark Greenwood and Michael Arribas-Ayllon
Biomedical Informatics Insights 2012:5 (Suppl. 1) 87-97
Original Research | Published on 30 Jan 2012



Labeling Emotions in Suicide Notes: Cost-Sensitive Learning with Heterogeneous Features
Jonathon Read, Erik Velldal and Lilja Øvrelid
Biomedical Informatics Insights 2012:5 (Suppl. 1) 99-103
Original Research | Published on 30 Jan 2012



A Combined Approach to Emotion Detection in Suicide Notes
Alexander Pak, Delphine Bernhard, Patrick Paroubek and Cyril Grouin
Biomedical Informatics Insights 2012:5 (Suppl. 1) 105-114
Original Research | Published on 30 Jan 2012



Topic Categorisation of Statements in Suicide Notes with Integrated Rules and Machine Learning
Aleksandar Kovacevic, Azad Dehghan, John A. Keane and Goran Nenadic
Biomedical Informatics Insights 2012:5 (Suppl. 1) 115-124
Original Research | Published on 30 Jan 2012



Construction of a Pig Physical Interactome Using Sequence Homology and a Comprehensive Reference Human Interactome
Felix Dreher, Atanas Kamburov and Ralf Herwig
Evolutionary Bioinformatics 2012:8 119-126
Short Report | Published on 24 Jan 2012



Testing Synchrony in Historical Biogeography: The Case of New World Primates and Hystricognathi Rodents
Leticia Loss-Oliveira, Barbara O. Aguiar and Carlos G. Schrago*
Evolutionary Bioinformatics 2012:8 127-137
Original Research | Published on 24 Jan 2012



A Novel Approach for the Simultaneous Analysis of Common and Rare Variants in Complex Traits
Ao Yuan, Guanjie Chen, Yanxun Zhou, Amy Bentley and Charles Rotimi
Bioinformatics and Biology Insights 2012:6 1-9
Methodology | Published on 22 Jan 2012



Interkingdom Gene Transfer May Contribute to the Evolution of Phytopathogenicity in Botrytis Cinerea
Bo Zhu, Qing Zhou, Guanlin Xie, Guoqing Zhang, Xiaowei Zhang, Yanli Wang, Gunchang Sun, Bin Li and Gulei Jin
Evolutionary Bioinformatics 2012:8 105-117
Original Research | Published on 11 Jan 2012



Evolutionary Genomics of Genes Involved in Olfactory Behavior in the Drosophila melanogaster Species Group
Nicolás Lavagnino, François Serra, Leonardo Arbiza, Hernán Dopazo and Esteban Hasson,
Evolutionary Bioinformatics 2012:8 89-104
Original Research | Published on 09 Jan 2012



BS-KNN: An Effective Algorithm for Predicting Protein Subchloroplast Localization
Jing Hu and Xianghe Yan
Evolutionary Bioinformatics 2012:8 79-87
Methodology | Published on 05 Jan 2012



Evaluating Translocation Gene Fusions by SNP Array Data
Hong Liu, Asher Zilberstein, Pascal Pannier, Frederic Fleche, Christopher Arendt, Christoph Lengauer and Chang S. Hahn
Cancer Informatics 2012:11 15-27
Original Research | Published on 21 Dec 2011




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