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Bioinformatics

Range of open access peer reviewed Bioinformatics journals & associated research articles. Read full text articles or submit your research for publishing


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Results 150-200 of 790 for Bioinformatics

Correction to: Prognostic Features of Signal Transducer and Activator of Transcription 3 in an ER(+) Breast Cancer Model System
Li-Yu D. Liu, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Yi-Shing Lin, Meei-Huey Jeng, Don A. Roth, King-Jen Chang and Fon-Jou Hsieh
Cancer Informatics 2014:13 125-129
Corrigendum | Published on 02 Nov 2014



Propensity Score Method for Partially Matched Omics Studies
Pei-Fen Kuan
Cancer Informatics 2014:Suppl. 7 1-10
Review | Published on 29 Oct 2014



A Pan-Cancer Modular Regulatory Network Analysis to Identify Common and Cancer-Specific Network Components
Sara A. Knaack, Alireza Fotuhi Siahpirani, and Sushmita Roy
Cancer Informatics 2014:Suppl. 5 69-84
Original Research | Published on 28 Oct 2014



Learning Dysregulated Pathways in Cancers from Differential Variability Analysis
Bahman Afsari, Donald Geman and Elana J. Fertig
Cancer Informatics 2014:Suppl. 5 61-67
Review | Published on 23 Oct 2014



Cloning and Expression Profiling of the Polycomb Gene, Retinoblastoma-related Protein from Tomato Solanum lycopersicum L.
Zainab M. Almutairi and Monther T. Sadder
Evolutionary Bioinformatics 2014:10 177-185
Original Research | Published on 23 Oct 2014



Classification of Images Acquired with Colposcopy Using Artificial Neural Networks
Priscyla W. Simões, Narjara B. Izumi, Ramon S. Casagrande, Ramon Venson, Carlos D. Veronezi, Gustavo P. Moretti, Edroaldo L. da Rocha, Cristian Cechinel, Luciane B. Ceretta, Eros Comunello, Paulo J. Martins, Rogério A. Casagrande, Maria L. Snoeyer and Sandra A. Manenti
Cancer Informatics 2014:13 119-124
Original Research | Published on 21 Oct 2014



eMBI: Boosting Gene Expression-based Clustering for Cancer Subtypes
Zheng Chang, Zhenjia Wang, Cody Ashby, Chuan Zhou, Guojun Li, Shuzhong Zhang and Xiuzhen Huang
Cancer Informatics 2014:Suppl. 2 105-112
Review | Published on 21 Oct 2014



Comparative Study on Sequence–Structure–Function Relationship of the Human Short-chain Dehydrogenases/Reductases Protein Family
Nu Thi Ngoc Tang and Ly Le
Evolutionary Bioinformatics 2014:10 165-176
Original Research | Published on 21 Oct 2014



Co-expression Network Analysis of Human lncRNAs and Cancer Genes
Steven B. Cogill and Liangjiang Wang
Cancer Informatics 2014:Suppl. 5 49-59
Review | Published on 19 Oct 2014



The Axis of Progression of Disease
Alan M. Tartakoff and Di Wu
Cancer Informatics 2014:Suppl. 6 7-13
Review | Published on 19 Oct 2014



A Comprehensive Comparison of Normalization Methods for Loading Control and Variance Stabilization of Reverse-Phase Protein Array Data
Wenbin Liu, Zhenlin Ju, Yiling Lu, Gordon B. Mills and Rehan Akbani
Cancer Informatics 2014:13 109-117
Original Research | Published on 16 Oct 2014



Network-Based Identification of Biomarkers Coexpressed with Multiple Pathways
Nancy Lan Guo and Ying-Wooi Wan
Cancer Informatics 2014:Suppl. 5 37-47
Review | Published on 16 Oct 2014



StickWRLD as an Interactive Visual Pre-Filter for Canceromics-Centric Expression Quantitative Trait Locus Data
Robert Wolfgang Rumpf, Samuel L. Wolock and William C. Ray
Cancer Informatics 2014:Suppl. 3 63-69
Review | Published on 16 Oct 2014



Developing a Comprehensive Database Management System for Organization and Evaluation of Mammography Datasets
Yirong Wu, Daniel L. Rubin, Ryan W. Woods, Mai Elezaby and Elizabeth S. Burnside
Cancer Informatics 2014:Suppl. 3 53-62
Review | Published on 16 Oct 2014



Network Analysis of Cancer-focused Association Network Reveals Distinct Network Association Patterns
Yuji Zhang and Cui Tao
Cancer Informatics 2014:Suppl. 3 45-51
Review | Published on 16 Oct 2014



Toolbox for Mobile-Element Insertion Detection on Cancer Genomes
Wan-Ping Lee, Jiantao Wu and Gabor T. Marth
Cancer Informatics 2014:Suppl. 4 45-52
Methodology | Published on 15 Oct 2014



Mapping Splicing Quantitative Trait Loci in RNA-Seq
Cheng Jia, Yu Hu, Yichuan Liu and Mingyao Li
Cancer Informatics 2014:Suppl. 4 35-43
Original Research | Published on 15 Oct 2014



TEGS-CN: A Statistical Method for Pathway Analysis of Genome-wide Copy Number Profile
Yen-Tsung Huang, Thomas Hsu and David C. Christiani
Cancer Informatics 2014:Suppl. 4 15-23
Original Research | Published on 15 Oct 2014



Unsupervised Outlier Profile Analysis
Debashis Ghosh and Song Li
Cancer Informatics 2014:Suppl. 4 25-33
Review | Published on 15 Oct 2014



CORM: An R Package Implementing the Clustering of Regression Models Method for Gene Clustering
Jiejun Shi and Li-Xuan Qin
Cancer Informatics 2014:Suppl. 4 11-13
Review | Published on 15 Oct 2014



Profiling the microRNA Expression in Human iPS and iPS-derived Retinal Pigment Epithelium
Heuy-Ching Wang, Whitney A. Greene, Ramesh R. Kaini, Jane Shen-Gunther, Hung-I H Chen, Hong Cai and Yufeng Wang
Cancer Informatics 2014:Suppl. 5 25-35
Review | Published on 15 Oct 2014



Master Regulators, Regulatory Networks, and Pathways of Glioblastoma Subtypes
Serdar Bozdag, Aiguo Li, Mehmet Baysan, and Howard A. Fine
Cancer Informatics 2014:Suppl. 3 33-44
Original Research | Published on 15 Oct 2014



Network-based Prediction of Cancer under Genetic Storm
Ahmet Ay, Dihong Gong, Tamer Kahveci
Cancer Informatics 2014:Suppl. 3 15-31
Original Research | Published on 15 Oct 2014



Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline
Karl W. Kroll, Nima E. Mokaram, Alexander R. Pelletier, David E. Frankhouser, Maximillian S. Westphal, Paige A. Stump, Cameron L. Stump, Ralf Bundschuh, James S. Blachly and Pearlly Yan
Cancer Informatics 2014:Suppl. 3 7-14
Review | Published on 15 Oct 2014



Automated Recommendation for Cervical Cancer Screening and Surveillance
Kavishwar B. Wagholikar, Kathy L. MacLaughlin, Petra M. Casey, Thomas M. Kastner, Michael R. Henry, Ronald A. Hankey, Steve G. Peters, Robert A. Greenes, Christopher G. Chute, Hongfang Liu and Rajeev Chaudhry
Cancer Informatics 2014:Suppl. 3 1-6
Original Research | Published on 15 Oct 2014 | Video abstract



Prediction of MicroRNA Precursors Using Parsimonious Feature Sets
Petra Stepanowsky, Eric Levy, Jihoon Kim, Xiaoqian Jiang and Lucila Ohno-Machado
Cancer Informatics 2014:Suppl. 1 95-102
Review | Published on 14 Oct 2014



Disease Biomarker Query from RNA-Seq Data
Henry Han and Xiaoqian Jiang
Cancer Informatics 2014:Suppl. 1 81-94
Review | Published on 14 Oct 2014



Integrated DNA Copy Number and Gene Expression Regulatory Network Analysis of Non-small Cell Lung Cancer Metastasis
Seyed M. Iranmanesh and Nancy L. Guo
Cancer Informatics 2014:Suppl. 5 13-23
Original Research | Published on 14 Oct 2014



CSNK1A1 and Gli2 as Novel Targets Identified Through an Integrative Analysis of Gene Expression Data, Protein-Protein Interaction and Pathways Networks in Glioblastoma Tumors: Can These Two Be Antagonistic Proteins?
Seema Mishra
Cancer Informatics 2014:13 93-108
Original Research | Published on 13 Oct 2014



Introductory Editorial: Computational Advances in Cancer Informatics (A)
Xiaoqian Jiang, Rui Chen, Samuel Cheng, Xia Jiang, Bairong Shen, Rong Xu, Song Yi
Cancer Informatics 2014:Suppl. 1 45-48
Editorial | Published on 13 Oct 2014



Inferring Aberrant Signal Transduction Pathways in Ovarian Cancer from TCGA Data
Richard Neapolitan and Xia Jiang
Cancer Informatics 2014:Suppl. 1 29-36
Review | Published on 13 Oct 2014



Optimization of Network Topology in Computer-Aided Detection Schemes Using Phased Searching with NEAT in a Time-Scaled Framework
Maxine Tan, Jiantao Pu and Bin Zheng
Cancer Informatics 2014:Suppl. 1 17-27
Review | Published on 13 Oct 2014



Mining Cancer-Specific Disease Comorbidities from a Large Observational Health Database
Yang Chen and Rong Xu
Cancer Informatics 2014:Suppl. 1 37-44
Review | Published on 13 Oct 2014



Text Mining in Cancer Gene and Pathway Prioritization
Yuan Luo, Gregory Riedlinger and Peter Szolovits
Cancer Informatics 2014:Suppl. 1 69-79
Review | Published on 13 Oct 2014



Modeling Signal Transduction from Protein Phosphorylation to Gene Expression
Chunhui Cai, Lujia Chen, Xia Jiang and Xinghua Lu
Cancer Informatics 2014:Suppl. 1 59-67
Review | Published on 13 Oct 2014



Feasibility and Implementation of a Literature Information Management System for Human Papillomavirus in Head and Neck Cancers with Imaging
Dee H. Wu, Chance L. Matthiesen, Anthony M. Alleman, Aaron L. Fournier and Tyler C. Gunter
Cancer Informatics 2014:Suppl. 1 49-57
Review | Published on 13 Oct 2014



Inferring the Effects of Honokiol on the Notch Signaling Pathway in SW480 Colon Cancer Cells
Michelle L. Wynn, Nikita Consul, Sofia D. Merajver and Santiago Schnell
Cancer Informatics 2014:Suppl. 5 1-12
Original Research | Published on 13 Oct 2014



RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment
Yan Guo, Shilin Zhao, Chung-I Li, Quanhu Sheng and Yu Shyr
Cancer Informatics 2014:Suppl. 6 1-5
Review | Published on 13 Oct 2014



Combined Benefit of Prediction and Treatment: A Criterion for Evaluating Clinical Prediction Models
Dean Billheimer, Eugene W. Gerner, Christine E. McLaren and Bonnie LaFleur
Cancer Informatics 2014:Suppl. 2 93-103
Review | Published on 05 Oct 2014



Bayesian Disease Classification Using Copy Number Data
Subharup Guha, Yuan Ji, and Veerabhadran Baladandayuthapani
Cancer Informatics 2014:Suppl. 2 83-91
Review | Published on 01 Oct 2014



A New Method for Motif Mining in Biological Networks
Yuan Xu, Qiang Zhang and Changjun Zhou
Evolutionary Bioinformatics 2014:10 155-163
Methodology | Published on 01 Oct 2014



Computational Methods for CLIP-seq Data Processing
Paula H. Reyes-Herrera and Elisa Ficarra
Bioinformatics and Biology Insights 2014:8 199-207
Review | Published on 01 Oct 2014



The Comparative Genomics and Phylogenomics of Leishmania amazonensis Parasite
Diogo A Tschoeke, Gisele L Nunes, Rodrigo Jardim, Joana Lima, Aline SR Dumaresq, Monete R Gomes, Leandro de Mattos Pereira, Daniel R Loureiro, Patricia H Stoco, Herbert Leonel de Matos Guedes, Antonio Basilio de Miranda, Jeronimo Ruiz, André Pitaluga, Floriano P Silva Jr, Christian M Probst, Nicholas J Dickens, Jeremy C Mottram, Edmundo C Grisard and Alberto MR Dávila
Evolutionary Bioinformatics 2014:10 131-153
Original Research | Published on 23 Sep 2014



Introductory Editorial: Classification, Predictive Modelling, and Statistical Analysis of Cancer Data (A)
Hongmei Jiang, Lingling An, Veerabhadran Baladandayuthapani, Paul Livermore Auer
Cancer Informatics 2014:Suppl. 2 1-3
Editorial | Published on 21 Sep 2014



Functional Annotation of Putative Regulatory Elements at Cancer Susceptibility Loci
Stephanie A. Rosse, Paul L. Auer, and Christopher S. Carlson
Cancer Informatics 2014:Suppl. 2 5-17
Review | Published on 21 Sep 2014



A Review of Cancer Risk Prediction Models with Genetic Variants
Xuexia Wang, Michael J. Oldani, Xingwang Zhao, Xiaohui Huang and Dajun Qian
Cancer Informatics 2014:Suppl. 2 19-28
Review | Published on 21 Sep 2014



A Bayesian Integrative Model for Genetical Genomics with Spatially Informed Variable Selection
Alberto Cassese, Michele Guindani and Marina Vannucci
Cancer Informatics 2014:Suppl. 2 29-37
Original Research | Published on 21 Sep 2014



Integrative Bayesian Network Analysis of Genomic Data
Yang Ni, Francesco C. Stingo and Veerabhadran Baladandayuthapani
Cancer Informatics 2014:Suppl. 2 39-48
Original Research | Published on 21 Sep 2014



Integrated Analysis of Whole-Genome Paired-End and Mate-Pair Sequencing Data for Identifying Genomic Structural Variations in Multiple Myeloma
Rendong Yang, Li Chen, Scott Newman, Khanjan Gandhi, Gregory Doho, Carlos S. Moreno, Paula M. Vertino, Leon Bernal-Mizarchi, Sagar Lonial, Lawrence H. Boise, Michael Rossi, Jeanne Kowalski, and Zhaohui S. Qin
Cancer Informatics 2014:Suppl. 2 49-53
Review | Published on 21 Sep 2014



Comparative Study of Computational Methods for Reconstructing Genetic Networks of Cancer-Related Pathways
Nafiseh Sedaghat, Takumi Saegusa, Timothy Randolph and Ali Shojaie
Cancer Informatics 2014:Suppl. 2 55-66
Review | Published on 21 Sep 2014




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