Results 700-750 of 790 for Bioinformatics

Outsourcing the Nucleus: Nuclear Pore Complex Genes are no Longer Encoded in Nucleomorph Genomes
Nadja Neumann, Daniel C. Jeffares and Anthony M. Poole
Evolutionary Bioinformatics 2006:2 23-34
Published on 27 Feb 2007

The Rv3799–Rv3807 Gene Cluster in Mycobacterium Tuberculosis Genome Corresponds to the ‘Ancient Conserved Region’ in CMN Mycolyltransferases
Hemalatha G. Ramulu, Adindla Swathi and Lalitha Guruprasad
Evolutionary Bioinformatics Online 2006:2 377-385
Original Research | Published on 27 Feb 2007

Cancer Informatics in the U.K.: The NCRI Informatics Initiative
Fiona Reddington, J. Max Wilkinson, Robin Clark, Helen Parkinson, Peter Kerr and Richard Begent
Cancer Informatics 2006:2 389-394
Published on 26 Feb 2007

Bias, Randomization, and Ovarian Proteomic Data: A Reply to "Producers and Consumers"
Keith A. Baggerly, Kevin R. Coombes, and Jeffrey S. Morris
Cancer Informatics 2005:1 9-14
Published on 26 Feb 2007

MySSP: Non-stationary evolutionary sequence simulation, including indels
Michael S. Rosenberg
Evolutionary Bioinformatics Online 2005:1 81-83
Published on 26 Feb 2007

Topological Bias in Distance-Based Phylogenetic Methods: Problems with Over- and Underestimated Genetic Distances
Xuhua Xia
Evolutionary Bioinformatics 2006:2 333-345
Published on 26 Feb 2007

Application of a New Probabilistic Model for Mining Implicit Associated Cancer Genes from OMIM and Medline
Shanfeng Zhu, Yasushi Okuno, Gozoh Tsujimoto and Hiroshi Mamitsuka
Cancer Informatics 2006:2 361-371
Published on 25 Feb 2007

Design of Early Validation Trials of Biomarkers
Daniel Normolle, Mack T. Ruffin IV and Dean Brenner
Cancer Informatics 2005:1 25-31
Published on 25 Feb 2007

Estimation of Phylogeny Using a General Markov Model
Vivek Jayaswal, Lars S. Jermiin and John Robinson
Evolutionary Bioinformatics Online 2005:1 62-80
Published on 25 Feb 2007

Pattern-Based Phylogenetic Distance Estimation and Tree Reconstruction
Michael Höhl, Isidore Rigoutsos and Mark A. Ragan
Evolutionary Bioinformatics 2006:2 359-375
Published on 25 Feb 2007

Detecting Outlier Microarray Arrays by Correlation and Percentage of Outliers Spots
Song Yang, Xiang Guo, Yaw-Ching Yang, Denise Papcunik, Caroline Heckman, Jeffrey Hooke, Craig D. Shriver, Michael N. Liebman and Hai Hu
Cancer Informatics 2006:2 351-360
Published on 24 Feb 2007

Proteomics: Analysis of Spectral Data
Harry B Burke
Cancer Informatics 2005:1 15-24
Published on 24 Feb 2007

Evolution of proteins and proteomes: a phylogenetics approach
Toni Gabaldón
Evolutionary Bioinformatics Online 2005:1 51-61
Published on 24 Feb 2007

Multiple Property Tolerance Analysis for the Evaluation of Missense Mutations
Tai-Sung Lee, Steven J. Potts, Matthew J. McGinniss and Charles M. Strom
Evolutionary Bioinformatics 2006:2 321-332
Published on 24 Feb 2007

An Empirical Study of Univariate and Genetic Algorithm-Based Feature Selection in Binary Classification with Microarray Data
Michael Lecocke and Kenneth Hess
Cancer Informatics 2006:2 313-327
Published on 23 Feb 2007

Characterising phase variations in MALDI-TOF data and correcting them by peak alignment
Simon M Lin, Richard P Haney, Michael J Campa, Michael C Fitzgerald and Edward F Patz, Jr.
Cancer Informatics 2005:1 32-40
Published on 23 Feb 2007

Arlequin (version 3.0): An integrated software package for population genetics data analysis
Laurent Excoffier, Guillaume Laval and Stefan Schneider
Evolutionary Bioinformatics Online 2005:1 47-50
Published on 23 Feb 2007

A Hybrid Approach for Biomarker Discovery from Microarray Gene Expression Data for Cancer Classification
Yanxiong Peng, Wenyuan Li and Ying Liu
Cancer Informatics 2006:2 301-311
Published on 22 Feb 2007

Impact of Freeze-thaw Cycles and Storage Time on Plasma Samples Used in Mass Spectrometry Based Biomarker Discovery Projects
Breeana L Mitchell, Yutaka Yasui, Christopher I Li, Annette L. Fitzpatrick, Paul D Lampe
Cancer Informatics 2005:1 98-104
Published on 22 Feb 2007

ALFRED: An Allele Frequency Database for Microevolutionary Studies
Haseena Rajeevan, Kei-Hoi Cheung, Rohit Gadagkar, Shannon Stein, Usha Soundararajan, Judith R Kidd, Andrew J Pakstis, Perry L Miller, and Kenneth K Kidd
Evolutionary Bioinformatics Online 2005:1 1-10
Published on 22 Feb 2007

A Fast and Specific Alignment Method for Minisatellite Maps
Sèverine Bérard, François Nicolas, Jérôme Buard, Olivier Gascuel and Eric Rivals
Evolutionary Bioinformatics 2006:2 303-320
Published on 22 Feb 2007

Integrative Analysis of Gene Expression Data Including an Assessment of Pathway Enrichment for Predicting Prostate Cancer
Pingzhao Hu, Celia M.T. Greenwood and Joseph Beyene
Cancer Informatics 2006:2 289-300
Published on 21 Feb 2007

Assessing the Statistical Significance of the Achieved Classification Error of Classifiers Constructed using Serum Peptide Profiles, and a Prescription for Random Sampling Repeated Studies for Massive High-Throughput Genomic and Proteomic Studies
James Lyons-Weiler, Richard Pelikan, Herbert J Zeh III, David C Whitcomb, David E Malehorne, William L Bigbeee, Milos Hauskrecht
Cancer Informatics 2005:1 53-77
Published on 21 Feb 2007

Phylogenetic biodiversity assessment based on systematic nomenclature
Ross H Crozier, Lisa J Dunnett and Paul-Michael Agapow
Evolutionary Bioinformatics Online 2005:1 11-36
Published on 21 Feb 2007

Genome Halving with an Outgroup
Chunfang Zheng, Qian Zhu and David Sankoff
Evolutionary Bioinformatics 2006:2 295-302
Published on 21 Feb 2007

Heterogeneous Biomedical Database Integration Using a Hybrid Strategy: A p53 Cancer Research Database
Vadim Y. Bichutskiy, Richard Colman, Rainer K. Brachmann and Richard H. Lathrop
Cancer Informatics 2006:2 277-287
Published on 20 Feb 2007

Novel approaches to smoothing and comparing SELDI TOF spectra
Sreelatha Meleth, Isam-Eldin Eltoum, Liu Zhu, Denise Oelschlager, Chandrika Piyathilake, David Chhieng and William E. Grizzle
Cancer Informatics 2005:1 78-85
Published on 20 Feb 2007

Fast Structural Search in Phylogenetic Databases
Jason T. L. Wang, Huiyuan Shan, Dennis Shasha and William H. Piel
Evolutionary Bioinformatics Online 2005:1 37-46
Published on 20 Feb 2007

Estimating the Relative Order of Speciation or Coalescence Events on a Given Phylogeny
Tanja Gernhard, Daniel Ford, Rutger Vos and Mike Steel
Evolutionary Bioinformatics 2006:2 285-293
Published on 20 Feb 2007

Data Perturbation Independent Diagnosis and Validation of Breast Cancer Subtypes Using Clustering and Patterns
G. Alexe, G.S. Dalgin, R. Ramaswamy, C. DeLisi and G. Bhanot
Cancer Informatics 2006:2 243-274
Published on 19 Feb 2007

The Need for Review and Understanding of SELDI/MALDI Mass Spectroscopy Data Prior to Analysis
William E. Grizzle, O. John Semmes, William Bigbee, Liu Zhu, Gunjan Malik, Denise K Oelschlager, Barkha Manne, Upender Manne
Cancer Informatics 2005:1 86-97
Published on 19 Feb 2007

The Role of the Phylogenetic Diversity Measure, PD, in Bio-informatics: Getting the Definition Right
Daniel P. Faith
Evolutionary Bioinformatics 2006:2 277-283
Published on 19 Feb 2007

Construction and Clarification of Dynamic Gene Regulatory Network of Cancer Cell Cycle via Microarray Data
Cheng-Wei Li, Yung-Hsiang Chu and Bor-Sen Chen
Cancer Informatics 2006:2 223-241
Published on 18 Feb 2007

Understanding the characteristics of mass spectrometry data through the use of simulation
Kevin R. Coombes, John M. Koomen, Keith A. Baggerly, Jeffrey S. Morris, and Ryuji Kobayashi
Cancer Informatics 2005:1 41-52
Published on 18 Feb 2007

Co-evolutionary Rates of Functionally Related Yeast Genes
Leonardo Mariño-Ramírez, Olivier Bodenreider, Natalie Kantz and I. King Jordan
Evolutionary Bioinformatics 2006:2 271-276
Published on 18 Feb 2007

Tumor Growth Rate Approximation-Assisted Estimation
Lihua An, S. Ejaz Ahmed and Adnan Ali
Cancer Informatics 2006:2 214-221
Published on 17 Feb 2007

A mathematical model for the onset of avascular tumor growth in response to the loss of p53 function
Howard A. Levine, Michael W. Smiley, Anna L. Tucker and Marit Nilsen-Hamilton
Cancer Informatics 2006:2 163-188
Published on 17 Feb 2007

Ovarian Cancer Classification based on Mass Spectrometry Analysis of Sera
Baolin Wu, Tom Abbott, David Fishman, Walter McMurray, Gil Mor, Kathryn Stone, David Ward, Kenneth Williams, Hongyu Zhao
Cancer Informatics 2006:2 123-132
Published on 17 Feb 2007

A Nuclear Ribosomal DNA Phylogeny of Acer Inferred with Maximum Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences
Guido W. Grimm, Susanne S. Renner, Alexandros Stamatakis and Vera Hemleben
Evolutionary Bioinformatics 2006:2 7-22
Published on 17 Feb 2007

A Nuclear Ribosomal DNA Phylogeny of Acer Inferred with Maximum Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences
Guido W. Grimm, Susanne S. Renner, Alexandros Stamatakis and Vera Hemleben
Evolutionary Bioinformatics 2006:2 7-22
Published on 17 Feb 2007

Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges
Daniel P. Faith, Andrew M. Baker
Evolutionary Bioinformatics 2006:2 121-128
Published on 17 Feb 2007

On the Number of Close-to-Optimal Feature Sets
Edward R. Dougherty and Marcel Brun
Cancer Informatics 2006:2 189-196
Published on 16 Feb 2007

Challenges in the Analysis of Mass-Throughput Data: A Technical Commentary from the Statistical Machine Learning Perspective
Constantin F. Aliferis, Alexander Statnikov and Ioannis Tsamardinos
Cancer Informatics 2006:2 133-162
Published on 16 Feb 2007

Applying a 4D multiscale in vivo tumor growth model to the exploration of radiotherapy scheduling: The effects of weekend treatment gaps and p53 gene status on the response of fast growing solid tumors
Dimitra D. Dionysiou and Georgios S. Stamatakos
Cancer Informatics 2006:2 113-121
Published on 16 Feb 2007

Minimum Conflict Individual Haplotyping from SNP Fragments and Related Genotype
Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu and Wei Zhang
Evolutionary Bioinformatics 2006:2 261-270
Published on 16 Feb 2007

Databases and QSAR for Cancer Research
Adeel Malik, Hemajit Singh, Munazah Andrabi, Syed Akhtar Husain and Shandar Ahmad
Cancer Informatics 2006:2 99-111
Published on 15 Feb 2007

Gaussian Quadrature Formulae for Arbitrary Positive Measures
Andrew D. Fernandes and William R. Atchley
Evolutionary Bioinformatics 2006:2 251-259
Published on 15 Feb 2007

Merging microarray data, robust feature selection, and predicting prognosis in prostate cancer
Jing Wang, Kim Anh Do, Sijin Wen, Spyros Tsavachidis, Timothy J. McDonnell, Christopher J. Logothetis and Kevin R. Coombes
Cancer Informatics 2006:2 87-97
Published on 14 Feb 2007

Identification of Conflicting Selective Effects on Highly Expressed Genes
Paul G. Higgs, Weilong Hao and G. Brian Golding
Evolutionary Bioinformatics 2007:3 1-13
Published on 14 Feb 2007

MapToGenome: A Comparative Genomic Tool that Aligns Transcript Maps to Sequenced Genomes
Srikrishna Putta, Jeramiah J. Smith, Chuck Staben and S. Randal Voss
Evolutionary Bioinformatics 2007:3 15-25
Published on 14 Feb 2007