Results 600-650 of 790 for Bioinformatics

Evaluating Microarray-based Classifiers: An Overview
A.-L. Boulesteix, C. Strobl, T. Augustin and M. Daumer
Cancer Informatics 2008:6 77-97
Published on 29 Feb 2008

A New Test Statistic Based on Shrunken Sample Variance for Identifying Differentially Expressed Genes in Small Microarray Experiments
Akihiro Hirakawa, Yasunori Sato, Chikuma Hamada and Isao Yoshimura
Bioinformatics and Biology Insights 2008:2 145-156
Published on 29 Feb 2008

Distribution of Polymorphic and Non-Polymorphic Microsatellite Repeats in Xenopus tropicalis
Zhenkang Xu, Laura Gutierrez, Matthew Hitchens, Steve Scherer, Amy K. Sater and Dan E. Wells
Bioinformatics and Biology Insights 2008:2 157-169
Published on 26 Feb 2008

Estimating the Proportion of True Null Hypotheses for Multiple Comparisons
Hongmei Jiang and R.W. Doerge
Cancer Informatics 2008:6 25-32
Published on 14 Feb 2008

Bayesian Estimation of Performance Measures of Cervical Cancer Screening Tests in the Presence of Covariates and Absence of a Gold Standard
Edson Zangiacomi Martinez, Francisco Louzada-Neto, Sophie Françoise Mauricette Derchain, Jorge Alberto Achcar, Renata Clementino Gontijo, Luis Otávio Zanatta Sarian and Kari Juhani Syrjänen
Cancer Informatics 2008:6 33-46
Published on 14 Feb 2008

A Unified Discussion on the Concept of Score Functions Used in the Context of Nonparametric Linkage Analysis
Lars Ängquist
Bioinformatics and Biology Insights 2008:2 119-132
Published on 14 Feb 2008

Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study
Wenjuan Gu, Hyungwon Choi and Debashis Ghosh
Cancer Informatics 2008:6 17-23
Published on 09 Feb 2008

Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study
Wenjuan Gu, Hyungwon Choi and Debashis Ghosh
Cancer Informatics 2008:6 17-23
Published on 09 Feb 2008

The Penna Model of Biological Aging
D. Stauffer
Bioinformatics and Biology Insights 2007:1 91-100
Published on 08 Feb 2008

The HapMap Resource is Providing New Insights into Ourselves and its Application to Pharmacogenomics
Wei Zhang, Mark J. Ratain and M. Eileen Dolan
Bioinformatics and Biology Insights 2008:2 15-23
Published on 01 Feb 2008

Using a Seed-Network to Query Multiple Large-Scale Gene Expression Datasets from the Developing Retina in Order to Identify and Prioritize Experimental Targets
Laura A. Hecker, Timothy C. Alcon, Vasant G. Honavar and M. Heather West Greenlee
Bioinformatics and Biology Insights 2008:2 401-412
Published on 01 Feb 2008

Structural Re-Alignment in an Immunogenic Surface Region of Ricin A Chain
Adam T. Zemla and Carol L. Ecale Zhou
Bioinformatic and Biology Insights 2008:2 5-13
Published on 01 Feb 2008

Beyond Field Effect: Analysis of Shrunken Centroids in Normal Esophageal Epithelia Detects Concomitant Esophageal Adenocarcinoma
Florin M. Selaru, Suna Wang, Jing Yin, Karsten Schulmann, Yan Xu, Yuriko Mori, Alexandru V. Olaru, Fumiaki Sato, James P. Hamilton, John M. Abraham, Paul Schneider, Bruce D. Greenwald, Jan Brabender and Stephen J. Meltzer
Bioinformatics and Biology Insights 2007:1 127-136
Published on 01 Feb 2008

Characterization of Non-Trivial Neighborhood Fold Constraints from Protein Sequences using Generalized Topohydrophobicity
Guillaume Fourty, Isabelle Callebaut and Jean-Paul Mornon
Bioinformatics and Biology Insights 2008:2 47-66
Published on 31 Jan 2008

HMM_RA: An Improved Method for Alpha-Helical Transmembrane Protein Topology Prediction
Jing Hu and Changhui Yan
Bioinformatics and Biology Insights 2008:2 67-74
Published on 31 Jan 2008

Evolution of the Influenza A Virus: Some New Advances
Raul Rabadan and Harlan Robins
Evolutionary Bioinformatics Online 2007:3 299-307
Published on 30 Jan 2008

Including Functional Annotations and Extending the Collection of Structural Classifications of Protein Loops (ArchDB)
Antoni Hermoso, Jordi Espadaler, Enrique Querol, E, Francesc X. Aviles, Michael J.E. Sternberg, Baldomero Oliva and Narcis Fernandez-Fuentes
Bioinformatics and Biology Insights 2007:1 77-90
Published on 30 Jan 2008

Constructing Tumor Progression Pathways and Biomarker Discovery with Fuzzy Kernel Kmeans and DNA Methylation Data
Zhenqiu Liu, Zhongmin Guo and Ming Tan
Cancer Informatics 2008:6 1-7
Published on 25 Jan 2008

Estimating the False Discovery Rate Using Mixed Normal Distribution for Identifying Differentially Expressed Genes in Microarray Data Analysis
Akihiro Hirakawa, Yasunori Sato, Takashi Sozu, Chikuma Hamada, Isao Yoshimura
Cancer Informatics 2007:3 140-148
Published on 22 Jan 2008

Proteomic Analysis in Diabetic Cardiomyopathy using Bioinformatics Approach
Allam Appa Rao, Hanuman Thota, Ramamurthy Adapala, Suresh Babu Changalasetty, Ramachandra Sridhar Gumpeny, Annapurna Akula, Lalitha Saroja Thota, Siva Reddy Challa, M.R. Narasinga Rao and Undurti N. Das
Bioinformatics and Biology Insights 2008:2 1-4
Published on 21 Jan 2008

A Practical Multifaceted Approach to Selecting Differentially Expressed Genes
Yingye Zheng and Margaret Pepe
Cancer Informatics 2007:3 203-212
Published on 15 Jan 2008

Common Peak Approach Using Mass Spectrometry Data Sets for Predicting the Effects of Anticancer Drugs on Breast Cancer
Masaru Ushijima, Satoshi Miyata, Shinto Eguchi, Masanori Kawakita, Masataka Yoshimoto, Takuji Iwase, Futoshi Akiyama, Goi Sakamoto, Koichi Nagasaki, Yoshio Miki, Tetsuo Noda, Yutaka Hoshikawa and Masaaki Matsuura
Cancer Informatics 2007:3 285-293
Published on 14 Dec 2007

The 2006 NESCent Phyloinformatics Hackathon: A Field Report
Hilmar Lapp, Sendu Bala, James P. Balhoff, Amy Bouck, Naohisa Goto, Mark Holder, Richard Holland, Alisha Holloway, Toshiaki Katayama, Paul O. Lewis, Aaron J. Mackey, Brian I. Osborne, William H. Piel, Sergei L. Kosakovsky Pond, Art F.Y. Poon, Wei-Gang Qiu et al
Evolutionary Bioinformatics 2007:3 287-296
Published on 14 Dec 2007

Germinal Center B Cell-Like (GCB) and Activated B Cell-Like (ABC) Type of Diffuse Large B Cell Lymphoma (DLBCL): Analysis of Molecular Predictors, Signatures, Cell Cycle State and Patient Survival
S. Blenk, J. Engelmann, M. Weniger, J. Schultz, M. Dittrich, A. Rosenwald, H.K. Müller-Hermelink, T. Müller and T. Dandekar
Cancer Informatics 2007:3 399-420
Published on 12 Dec 2007

Public Databases and Software for the Pathway Analysis of Cancer Genomes
Ivy F.L. Tsui, Raj Chari, Timon P.H. Buys and Wan L. Lam
Cancer Informatics 2007:3 379-397
Published on 12 Dec 2007

Peptide Vocabulary Analysis Reveals Ultra-Conservation and Homonymity in Protein Sequences
Derek Gatherer
Bioinformatics and Biology Insights 2007:1 101-126
Published on 12 Dec 2007

Systems Level Modeling of the Cell Cycle Using Budding Yeast
B.P. Ingalls, B.P. Duncker, D.R. Kim and B.J. McConkey
Cancer Informatics 2007:3 357-370
Published on 11 Dec 2007

Comparison of Computational Algorithms for the Classification of Liver Cancer using SELDI Mass Spectrometry: A Case Study
Changyu Shen, Timothy E Breen, Lacey E Dobrolecki, C. Max Schmidt, George W. Sledge , Kathy D. Miller and Robert J Hickey
Cancer Informatics 2007:3 329-339
Published on 11 Dec 2007

Phylogenetic Study of the Evolution of PEP-Carboxykinase
Sanjukta Aich and Louis T.J. Delbaere
Evolutionary Bioinformatics 2007:3 333-340
Published on 11 Dec 2007

Efficient Tree Searches with Available Algorithms
Gonzalo Giribet
Evolutionary Bioinformatics 2007:3 341-356
Published on 12 Nov 2007

Software for Quantifying and Simulating Microsatellite Genotyping Error
Paul C.D. Johnson and Daniel T. Haydon
Bioinformatics and Biology Insights 2007:1 71-75
Published on 12 Nov 2007

Structural Evolution of the ABC Transporter Subfamily B
Flanagan, J.U. and Huber, T.
Evolutionary Bioinformatics 2007:3 309-316
Published on 08 Nov 2007

Identifying Stress Transcription Factors Using Gene Expression and TF-Gene Association Data
Wei-Sheng Wu and Bor-Sen Chen
Bioinformatics and Biology Insights 2007:1 137-145
Published on 16 Oct 2007

Combining Clinical and Genomic Covariates via Cov-TGDR
Shuangge Ma and Jian Huang
Cancer Informatics 2007:3 371-378
Published on 15 Oct 2007

An Insulin-Like Modular Basis for the Evolution of Glucose Transporters (GLUT) with Implications for Diabetes
Robert Root-Bernstein
Evolutionary Bioinformatics 2007:3 317-331
Published on 15 Oct 2007

Prediction of Functional Class of Proteins and Peptides Irrespective of Sequence Homology by Support Vector Machines
Zhi Qun Tang, Hong Huang Lin, Hai Lei Zhang, Lian Yi Han, Xin Chen and Yu Zong Chen
Bioinformatics and Biology Insights 2007:1 19-47
Published on 15 Oct 2007

GSMA: Gene Set Matrix Analysis, An Automated Method for Rapid Hypothesis Testing of Gene Expression Data
Chris Cheadle, Tonya Watkins, Jinshui Fan, Marc A. Williams, Steven Georas, John Hall, Antony Rosen and Kathleen C. Barnes
Bioinformatics and Biology Insights 2007:1 49-62
Published on 15 Oct 2007

GSMA: Gene Set Matrix Analysis, An Automated Method for Rapid Hypothesis Testing of Gene Expression Data
Chris Cheadle, Tonya Watkins, Jinshui Fan, Marc A. Williams, Steven Georas, John Hall, Antony Rosen and Kathleen C. Barnes
Bioinformatics and Biology Insights 2007:1 49-62
Published on 15 Oct 2007

Tumor Genome Wide DNA Alterations Assessed by Array CGH in Patients with Poor and Excellent Survival Following Operation for Colorectal Cancer
Kristina K. Lagerstedt, Johan Staaf, Göran Jönsson, Elisabeth Hansson, Christina Lönnroth, Ulf Kressner, Lars Lindström, Svante Nordgren, Åke Borg and Kent Lundholm
Cancer Informatics 2007:3 341-355
Published on 12 Oct 2007

Screening the Single Nucleotide Polymorphisms in Patients with Internal Carotid Artery Stenosis by Oligonucleotide-Based Custom DNA Array
Kenji Nakai, Mayu Oyanagi, Jiro Hitomi, Kuniaki Ogasawara, Takashi Inoue, Masakazu Kobayashi, Keiko Nakai, Akira Suwabe, Wataru Habano, Toshiaki Baba, Hiroshi Yoshida and Akira Ogawa
Bioinformatics and Biology Insights 2007:1 63-69
Published on 12 Oct 2007

Minimizing Contradictions on Circular Order of Phylogenic Trees
Marc Thuillard
Evolutionary Bioinformatics 2007:3 267-277
Published on 11 Oct 2007

Selection Effects on the Positioning of Genes and Gene Structures from the Interplay of Replication and Transcription in Bacterial Genomes
Kazuharu Arakawa and Masaru Tomita
Evolutionary Bioinformatics 2007:3 279-286
Published on 09 Oct 2007

Selection Effects on the Positioning of Genes and Gene Structures from the Interplay of Replication and Transcription in Bacterial Genomes
Kazuharu Arakawa and Masaru Tomita
Evolutionary Bioinformatics 2007:3 279-286
Published on 09 Oct 2007

Selection Effects on the Positioning of Genes and Gene Structures from the Interplay of Replication and Transcription in Bacterial Genomes
Kazuharu Arakawa and Masaru Tomita
Evolutionary Bioinformatics 2007:3 279-286
Published on 09 Oct 2007

Phylogenomic Analysis Reveals Extensive Phylogenetic Mosaicism in the Human GPCR Superfamily
Robin G. Allaby and Mathew Woodwark
Evolutionary Bioinformatics 2007:3 357-370
Published on 26 Sep 2007

Non-Molecular-Clock-Like Evolution following Viral Origins in Homo sapiens
Wendy Mok, Kelly Seto and Jon Stone
Evolutionary Bioinformatics 2007:3 263-266
Published on 26 Sep 2007

Underlying Principles of Natural Selection in Network Evolution: Systems Biology Approach
Bor-Sen Chen and Wei-Sheng Wu
Evolutionary Bioinformatics 2007:3 245-262
Published on 26 Sep 2007

Hedging Our Bets: The Expected Contribution of Species to Future Phylogenetic Diversity
Mike Steel, Aki Mimoto and Arne Ø. Mooers
Evolutionary Bioinformatics 2007:3 237-244
Published on 25 Sep 2007

Parametric Power Spectral Density Analysis of Noise from Instrumentation in MALDI TOF Mass Spectrometry
Hyunjin Shin, Miray Mutlu, John M. Koomen and Mia K. Markey
Cancer Informatics 2007:3 219-230
Published on 17 Sep 2007

Normalized, Segmented or Called aCGH Data?
Wessel N. van Wieringen, Mark A. van de Wiel and Bauke Ylstra
Cancer Informatics 2007:3 321-327
Published on 17 Sep 2007