Results 550-600 of 791 for Bioinformatics

An Analysis Pipeline for Genome-wide Association Studies
Stefan Stefanov, James Lautenberger and Bert Gold
Cancer Informatics 2008:6 455-461
Published on 24 Sep 2008

Association Between a Prognostic Gene Signature and Functional Gene Sets
Manuela Hummel, Klaus H. Metzeler, Christian Buske, Stefan K. Bohlander and Ulrich Mansmann
Bioinformatics and Biology Insights 2008:2 329-341
Published on 22 Sep 2008

Evolution of the G+C Content Frontier in the Rat Cytomegalovirus Genome
Derek Gatherer
Virology: Research and Treatment 2008:1 75-86
Published on 09 Sep 2008

Algorithmic Discovery of Methylation “Hot Spots” in DNA from Lymphoma Patients
Chris Papageorgio, Robert Harrison, Farahnaz B. Rahmatpanah, Kristen Taylor, Wade Davis and Charles W. Caldwell
Cancer Informatics 2008:6 449-453
Published on 04 Sep 2008

Grammatical Immune System Evolution for Reverse Engineering Nonlinear Dynamic Bayesian Models
B.A. McKinney and D. Tian
Cancer Informatics 2008:6 433-447
Published on 28 Aug 2008

What Does PLIER Really Do?
Terry M.Therneau and Karla V.Ballman
Cancer Informatics 2008:6 423-431
Published on 27 Aug 2008

Designing Toxicogenomics Studies that use DNA Array Technology
Robert R. Delongchamp, Cruz Velasco, Varsha G. Desai, Taewon Lee and James C. Fuscoe
Bioinformatics and Biology Insights 2008:2 317-328
Published on 14 Aug 2008

Efficiency Analysis of Competing Tests for Finding Differentially Expressed Genes in Lung Adenocarcinoma
Rick Jordan, Satish Patel, Hai Hu, and James Lyons-Weiler
Cancer Informatics 2008:6 389-421

Published on 14 Jul 2008

Evidence of Highly Regulated Genes (in-Hubs) in Gene Networks of Saccharomyces Cerevisiae
Jesper Lundström, Johan Björkegren and Jesper Tegnér
Bioinformatics and Biology Insights 2008:2 307-316
Published on 14 Jul 2008

A Biological Evaluation of Six Gene Set Analysis Methods for Identification of Differentially Expressed Pathways in Microarray Data
Irina Dinu, Qi Liu, John D. Potter, Adeniyi J. Adewale, Gian S. Jhangri, Thomas Mueller, Gunilla Einecke, Konrad Famulsky, Philip Halloran and Yutaka Yasui
Cancer Informatics 2008:6 357-368
Published on 20 Jun 2008

An Integrative Analysis of microRNA and mRNA Expression - A Case Study
Li-Xuan Qin
Cancer Informatics 2008:6 369-379
Published on 17 Jun 2008

The Anti-tumour Agent, Cisplatin, and its Clinically Ineffective Isomer, Transplatin, Produce Unique Gene Expression Profiles in Human Cells
Anne M. Galea and Vincent Murray
Cancer Informatics 2008:6 315-355

Published on 10 Jun 2008

Non-Negative Matrix Factorization for the Analysis of Complex Gene Expression Data: Identification of Clinically Relevant Tumor Subtypes
Attila Frigyesi and Mattias Höglund
Cancer Informatics 2008:6 275-292
Published on 29 May 2008

The Use of Artificial Neural Networks in Prediction of Congenital CMV Outcome from Sequence Data
Ravit Arav-Boger, Yuval S. Boger, Charles B. Foster and Zvi Boger
Bioinformatics and Biology Insights 2008:2 281-289
Published on 29 May 2008

Normalization and Gene p-Value Estimation: Issues in Microarray Data Processing
Katrin Fundel, Robert Küffner, Thomas Aigner and Ralf Zimmer
Bioinformatics and Biology Insights 2008:2 291-305
Published on 28 May 2008

Detecting Role Errors in the Gene Hierarchy of the NCI Thesaurus
Hua Min, Barry Cohen, Michael Halper, Marc Oren and Yehoshua Perl
Cancer Informatics 2008:6 293-313
Published on 27 May 2008

Unsupervised Meta-Analysis on Diverse Gene Expression Datasets Allows Insight into Gene Function and Regulation
Julia C. Engelmann, Roland Schwarz, Steffen Blenk, Torben Friedrich, Philipp N. Seibel, Thomas Dandekar and Tobias Müller
Bioinformatics and Biology Insights 2008:2 265-280
Published on 26 May 2008

Neuroinformatics: From Bioinformatics to Databasing the Brain
Thomas M. Morse
Bioinformatics and Biology Insights 2008:2 253-264
Published on 14 May 2008

Comparison of Antigenic Regions Identified on IgG1Fc Using Bioinformatics vs Pepscan Analysis
Paul N. Nelson, Olwyn M.R. Westwood, Graham Freimanis, Denise Roden, Samir Sissaoui, Paul Rylance and Frank C. Hay
Clinical Medicine: Arthritis and Musculoskeletal Disorders 2008:1 33-42
Published on 14 May 2008

Examining Ancient Inter-domain Horizontal Gene Transfer
Francisca C. Almeida, Magdalena Leszczyniecka, Paul B. Fisher and Rob DeSalle
Evolutionary Bioinformatics 2008:4 109-119
Published on 09 May 2008

Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology
Anthony Levasseur, Pierre Pontarotti, Olivier Poch and Julie D. Thompson
Evolutionary Bioinformatics 2008:4 121-137
Published on 08 May 2008

Evaluation of Combining Several Statistical Methods with a Flexible Cutoff for Identifying Differentially Expressed Genes in Pairwise Comparison of EST Sets
Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Olof Olsson and Björn Olsson
Bioinformatics and Biology Insights 2008:2 215-237
Published on 01 May 2008

Methodology for Constructing Problem Definitions in Bioinformatics
Amy M. Hauth and Gertraud Burger
Bioinformatics and Biology Insights 2008:2 239-251

Published on 24 Apr 2008

An Analysis of Risk Factors for Developing Hepatocellular Carcinoma in a Group of Hepatitis C Patients with Stage 3 Fibrosis following Interferon Therapy
Sabina Mahmood , Kazumi Togawa, Miwa Kawanaka, Gouichi Niiyama, Gotaro Yamada
Cancer Informatics 2008:6 381-387
Published on 23 Apr 2008

Effects of Feeding Periods of High Cholesterol and Saturated Fat Diet on Blood Biochemistry and Hydroxyproline Fractions in Rabbits
Mohamed A. K. Abdelhalim, N. J. Siddiqi, A. S. ALhomida and Mohammed S. Al- Ayed
Bioinformatics and Biology Insights 2008:2 95-100
Published on 22 Apr 2008

Connections Between ETV6-Modulated Genes: Identification of Shared Features
Gino Boily, Patrick Beaulieu, Jasmine Healy and Daniel Sinnett
Cancer Informatics 2008:6 183-201
Published on 21 Apr 2008

Connections Between ETV6-Modulated Genes: Identification of Shared Features
Gino Boily, Patrick Beaulieu, Jasmine Healy and Daniel Sinnett
Cancer Informatics 2008:6 183-201
Published on 21 Apr 2008

BRB-ArrayTools Data Archive for Human Cancer Gene Expression: A Unique and Efficient Data Sharing Resource
Yingdong Zhao and Richard Simon
Cancer Informatics 2008:6 9-15
Published on 21 Apr 2008

Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios
Rachel Karchin, Mukesh Agarwal, Andrej Sali, Fergus Couch and Mary S. Beattie
Cancer Informatics 2008:6 203-216
Published on 18 Apr 2008

Comparison of a Label-Free Quantitative Proteomic Method Based on Peptide Ion Current Area to the Isotope Coded Affinity Tag Method
Soyoung Ryu, Byron Gallis, Young Ah Goo, Scott A. Shaffer, Dragan Radulovic, David R. Goodlett
Cancer Informatics 2008:6 243-255
Published on 17 Apr 2008

Topological Properties of Co-Occurrence Networks in Published Gene Expression Signatures
Heiko Muller and Francesco Acquati
Bioinformatics and Biology Insights 2008:2 203-213
Published on 17 Apr 2008

Uncovering Biological Network Function via Graphlet Degree Signatures
Tijana Milenković and Nataša Pržulj
Cancer Informatics 2008:6 257-273

Published on 14 Apr 2008

Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios
Junfeng Liu, Weichuan Yu, Baolin Wu and Hongyu Zhao
Cancer Informatics 2008:6 217-241
Published on 11 Apr 2008

A Standards based Ontological Approach to Information Handling for use by Organizations Providing Human Tissue for Research
Mary E. Edgerton, Carl Morrison, Virginia A. LiVolsi, Christopher A. Moskaluk, Stephen J. Qualman, M. Kay Washington and William E. Grizzle
Cancer Informatics 2008:6 127-137
Published on 10 Apr 2008

Sample Preparation for in vitro Analysis of Iodine in Thyroid Tissue using X-ray Fluorescence
Marie Hansson, Mats Isaksson and Gertrud Berg
Cancer Informatics 2008:6 51-57
Published on 10 Apr 2008

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis
Junghee Han, Dustin Potter, Tahsin Kurc, Greg Singer, Pearlly S. Yan, Sun Hao, Shannon Hastings, Stephen Langella, Scott Oster, Ramana V. Davuluri,Tim H.-M. Huang and Joel H. Saltz
Cancer Informatics 2008:6 111-125
Published on 10 Apr 2008

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis
Junghee Han, Dustin Potter, Tahsin Kurc, Greg Singer, Pearlly S. Yan, Sun Hao, Shannon Hastings, Stephen Langella, Scott Oster, Ramana V. Davuluri,Tim H.-M. Huang and Joel H. Saltz
Cancer Informatics 2008:6 111-125
Published on 10 Apr 2008

MCAM: A Database to Accelerate the Identification of Functional Cell Adhesion Molecules
Anguraj Sadanandam, Sudipendra Nath Pal, Joe Ziskovsky, Prathibha Hegde and Rakesh K. Singh
Cancer Informatics 2008:6 47-50
Published on 31 Mar 2008

Comparisons of Robustness and Sensitivity between Cancer and Normal Cells by Microarray Data
Liang-Hui Chu and Bor-Sen Chen
Cancer Informatics 2008:6 165-181
Published on 28 Mar 2008

Understanding Structural Features of Microbial Lipases - An Overview
John Geraldine Sandana Mala and Satoru Takeuchi
Analytical Chemistry Insights 2008:3 9-19

Published on 27 Mar 2008

DNA Copy Number Analysis in Gastrointestinal Stromal Tumors Using Gene Expression Microarrays
Cristina R. Antonescu, Kai Wu, Guoliang Leon Xing, Manqiu Cao, Yaron Turpaz, Margaret A. Leversha, Earl Hubbell, Robert G. Maki, C. Garrett Miyada, and Raji Pillai
Cancer Informatics 2008:6 59-75
Published on 27 Mar 2008

Chromosome 20q Amplification Regulates in Vitro Response to Kinesin-5 Inhibitor
Aimee L. Jackson, Mao Mao, Sumire Kobayashi, Teresa Ward, Matthew Biery, Hongyue Dai, Steven R. Bartz and Peter S. Linsley
Cancer Informatics 2008:6 147-164
Published on 26 Mar 2008

Chromosome 20q Amplification Regulates in Vitro Response to Kinesin-5 Inhibitor
Aimee L. Jackson, Mao Mao, Sumire Kobayashi, Teresa Ward, Matthew Biery, Hongyue Dai, Steven R. Bartz and Peter S. Linsley
Cancer Informatics 2008:6 147-164
Published on 26 Mar 2008

A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis
Jingping Xie, Philip S. Crooke, Brett A. McKinney, Joel Soltman and Stephen J. Brandt
Cancer Informatics 2008:6 138-146
Published on 12 Mar 2008

Searching for Factors that Distinguish Disease-Prone and Disease-Resistant Prions via Sequence Analysis
Kanaka Durga Kedarisetti, Scott Dick and Lukasz Kurgan
Bioinformatics and Biology Insights 2008:2 133-144
Published on 12 Mar 2008

Ontologies for Bioinformatics
Nadine Schuurman and Agnieszka Leszczynski
Bioinformatics and Biology Insights 2008:2 187-200
Published on 12 Mar 2008

Utility of Computational Methods to Identify the Apoptosis Machinery in Unicellular Eukaryotes
Pierre Marcel Durand and Theresa Louise Coetzer
Bioinformatics and Biology Insights 2008:2 101-117
Published on 12 Mar 2008

Coarse-Grained Models Reveal Functional Dynamics – II. Molecular Dynamics Simulation at the Coarse-Grained Level – Theories and Biological Applications
Choon-Peng Chng and Lee-Wei Yang
Bioinformatics and Biology Insights 2008:2 171-185
Published on 05 Mar 2008

Coarse-Grained Models Reveal Functional Dynamics - I. Elastic Network Models – Theories, Comparisons and Perspectives
Lee-Wei Yang and Choon-Peng Chng
Bioinformatics and Biology Insights 2008:2 25-45

Published on 04 Mar 2008

Effect of Quantitative Nuclear Image Features on Recurrence of Ductal Carcinoma In Situ (DCIS) of the Breast
David E. Axelrod, Naomi A. Miller, H. Lavina Lickley, Jin Qian, William A. Christens-Barry, Yan Yuan, Yuejiao Fu and Judith-Anne W. Chapman
Cancer Informatics 2008:6 99-109
Published on 01 Mar 2008