Evolutionary Bioinformatics

Identification of Conflicting Selective Effects on Highly Expressed Genes
Paul G. Higgs, Weilong Hao and G. Brian Golding
Evolutionary Bioinformatics 2007:3 1-13
Published on 14 Feb 2007

MapToGenome: A Comparative Genomic Tool that Aligns Transcript Maps to Sequenced Genomes
Srikrishna Putta, Jeramiah J. Smith, Chuck Staben and S. Randal Voss
Evolutionary Bioinformatics 2007:3 15-25
Published on 14 Feb 2007

LASER: A Maximum Likelihood Toolkit for Detecting Temporal Shifts in Diversification Rates From Molecular Phylogenies
Daniel L. Rabosky
Evolutionary Bioinformatics 2006:2 247-250
Published on 14 Feb 2007

Total Evidence, Average Consensus and Matrix Representation with Parsimony: What a Difference Distances Make
Claudine Levasseur and François-Joseph Lapointe
Evolutionary Bioinformatics 2006:2 1-5
Published on 13 Feb 2007

Estimating Population Parameters using the Structured Serial Coalescent with Bayesian MCMC Inference when some Demes are Hidden
Greg Ewing and Allen Rodrigo
Evolutionary Bioinformatics 2006:2 227-235
Published on 12 Feb 2007

Unravelling Selection Shifts Among Foot-and-Mouth Disease Virus (FMDV) Serotypes
Damien C. Tully and Mario A. Fares
Evolutionary Bioinformatics 2006:2 211-225

Published on 11 Feb 2007

PIRSF Family Classification System for Protein Functional and Evolutionary Analysis
Anastasia N. Nikolskaya, Cecilia N. Arighi, Hongzhan Huang, Winona C. Barker and Cathy H. Wu
Evolutionary Bioinformatics 2006:2 197-209
Published on 10 Feb 2007

Spectral Analysis of Sequence Variability in Basic-Helix-loop-helix (bHLH) Protein Domains
Zhi Wang and William R. Atchley
Evolutionary Bioinformatics 2006:2 187-196
Published on 09 Feb 2007

CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies
Chunghau Lee, Sigal Blay, Arne Ø. Mooers, Ambuj Singh, Todd H. Oakley
Evolutionary Bioinformatics 2006:2 183-186
Published on 07 Feb 2007

MBEToolbox 2.0: An enhanced version of a MATLAB toolbox for Molecular Biology and Evolution
James J. Cai, David K. Smith, Xuhua Xia and Kwok-yung Yuen
Evolutionary Bioinformatics 2006:2 179-182
Published on 06 Feb 2007

Modelling prokaryote gene content
Matthew Spencer, Edward Susko, and Andrew J. Roger
Evolutionary Bioinformatics 2006:2 157-178
Published on 05 Feb 2007

Assessing the Applicability of the GTR Nucleotide Substitution Model Through Simulations
Laurent Gatto, Daniele Catanzaro and Michel C. Milinkovitch
Evolutionary Bioinformatics 2006:2 145-155
Published on 04 Feb 2007

Using minimum bootstrap support for splits to construct confidence regions for trees
Edward Susko
Evolutionary Bioinformatics 2006:2 129-143
Published on 03 Feb 2007

A new effective method for estimating missing values in the sequence data prior to phylogenetic analysis
Abdoulaye Baniré Diallo, François-Joseph Lapointe and Vladimir Makarenkov
Evolutionary Bioinformatics 2006:2 237-246
Published on 01 Feb 2007

3 UTR-located ALU Elements: Donors of Potetial miRNA Target Sites and Mediators of Network miRNA-based Regulatory Interactions
Evelina Daskalova, Vesselin Baev, Ventsislav Rusinov, and Ivan Minkov
Evolutionary Bioinformatics 2006:2 103-120
Published on 18 Jan 2007

Functionality and the evolution of marginal stability in proteins: Inferences from lattice simulations
Paul D. Williams, David D. Pollock and Richard A. Goldstein
Evolutionary Bioinformatics 2006:2 91-101
Published on 16 Jan 2007

Evolution, Bioinformatics and Evolutionary Bioinformatics Online
Dr Mark Pagel
Evolutionary Bioinformatics 2006:2 357-358
Published on 15 Jan 2007

Positional Homology in Bacterial Genomes
Ingrid J. Burgetz, Salimah Shariff, Andy Pang and Elisabeth R. M. Tillier
Evolutionary Bioinformatics 2006:2 77-90
Published on 14 Jan 2007

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes
Howard A. Ross, David C. Nickle, Yi Liu, Laura Heath, Mark A. Jensen, Allen G. Rodrigo and James I. Mullins
Evolutionary Bioinformatics 2006:2 53-76
Published on 13 Jan 2007

Finding common protein interaction patterns across organisms
Mirco Gerke, Erich Bornberg-Bauer, Xiaoyi Jiang and Georg Fuellen
Evolutionary Bioinformatics 2006:2 45-52
Published on 12 Jan 2007

Coevolution of exploiter specialization and victim mimicry can be cyclic and saltational
Niclas Norrström, Wayne M. Getz, Noél M.A. Holmgren
Evolutionary Bioinformatics 2006:2 35-43
Published on 11 Jan 2007