Results 300-350 of 525 for Genomics

Prediction of Breast Cancer Metastasis by Gene Expression Profiles: A Comparison of Metagenes and Single Genes
Mark Burton, Mads Thomassen, Qihua Tan and Torben A. Kruse
Cancer Informatics 2012:11 193-217
Original Research | Published on 10 Dec 2012

Methods of Combinatorial Optimization to Reveal Factors Affecting Gene Length
Alexander Bolshoy, and Tatiana Tatarinova
Bioinformatics and Biology Insights 2012:6 317-327
Original Research | Published on 10 Dec 2012

A Systematic Approach to Implementing Monogenic Genomic Medicine: Genotype-Driven Diagnosis of Genetic Diseases
Sarah Elizabeth Soden, Carol Jean Saunders, Darrell Lee Dinwiddie, Neil Andrew Miller, Andrea Michelle Atherton, Noor Abu Alnadi, J. Steve Leeder, Laurie Denise Smith, and Stephen Francis Kingsmore
Journal of Genomes and Exomes 2012:1 15-24
Case report | Published on 06 Dec 2012

Effects of High Fat Feeding on Liver Gene Expression in Diabetic Goto-Kakizaki Rats
Richard R. Almon, Debra C. DuBois, Siddharth Sukumaran, Xi Wang, Bai Xue, Jing Nie and William J. Jusko
Gene Regulation and Systems Biology 2012:6 151-168
Original Research | Published on 28 Nov 2012

Clinical Significance of Alk-1 Gene Abnormalities in Diffuse Large Cell Lymphoma
L. Korashy, H. El-Zawahry, S. Abdou, D. Shahin, F. Sherif, W. Farrag, O. Abdel-Khalik, H. Salem and A. El-Sebaaie.
Clinical Medicine Insights: Oncology 2012:6 395-405
Original Research | Published on 26 Nov 2012

Functional Annotation Analytics of Bacillus Genomes Reveals Stress Responsive Acetate Utilization and Sulfate Uptake in the Biotechnologically Relevant Bacillus megaterium
Baraka S. Williams, Raphael D. Isokpehi, Andreas N. Mbah, Antoinesha L. Hollman, Christina O. Bernard, Shaneka S. Simmons, Wellington K. Ayensu and Bianca L. Garner
Bioinformatics and Biology Insights 2012:6 275-286
Original Research | Published on 21 Nov 2012

Evolutionary Analysis of Sequence Divergence and Diversity of Duplicate Genes in Aspergillus fumigatus
Ence Yang, Amanda M. Hulse and James J. Cai
Evolutionary Bioinformatics 2012:8 623-644
Original Research | Published on 19 Nov 2012

A Novel Multi-Scale Modeling Approach to Infer Whole Genome Divergence
Eli Reuveni and Alessandro Giuliani
Evolutionary Bioinformatics 2012:8 611-622
Methodology | Published on 14 Nov 2012

Myosinome: A Database of Myosins from Select Eukaryotic Genomes to Facilitate Analysis of Sequence-Structure-Function Relationships
Divya P. Syamaladevi, Margaret S Sunitha, S. Kalaimathy, Chandrashekar C. Reddy, Mohammed Iftekhar, Shaik N. Pasha and R. Sowdhamini
Bioinformatics and Biology Insights 2012:6 247-254
Original Research | Published on 12 Nov 2012

BioNetwork Bench: Database and Software for Storage, Query, and Analysis of Gene and Protein Networks
Oksana Kohutyuk, Fadi Towfic, M. Heather West Greenlee and Vasant Honavar
Bioinformatics and Biology Insights 2012:6 235-246
Software or database review | Published on 08 Nov 2012

Phylogenetic Analysis and Comparative Genomics of Purine Riboswitch Distribution in Prokaryotes
Payal Singh and Supratim Sengupta
Evolutionary Bioinformatics 2012:8 589-609
Original Research | Published on 06 Nov 2012

Lack of Influence of the Androgen Receptor Gene CAG-Repeat Polymorphism on Clinical and Electrocardiographic Manifestations of the Brugada Syndrome in Man
S. Mariani, B. Musumeci, S. Basciani, D. Fiore, P. Francia, A. Persichetti, M. Volpe, C. Autore, C. Moretti, S. Ulisse, and L. Gnessi
Clinical Medicine Insights: Cardiology 2012:6 145-152
Original Research | Published on 31 Oct 2012

FOXO1 Up-Regulates Human L-selectin Expression Through Binding to a Consensus FOXO1 Motif
Yuefen Lou, Xiaojiong Lu and Xitong Dang
Gene Regulation and Systems Biology 2012:6 139-149
Original Research | Published on 29 Oct 2012

Thymidine Phosphorylase Gene Expression in Stage III Colorectal Cancer
Elinor B. Lindskog, Yvonne Wettergren, Elisabeth Odin, Bengt Gustavsson and Kristoffer Derwinger
Clinical Medicine Insights: Oncology 2012:6 347-353
Original Research | Published on 15 Oct 2012

Genome-Wide Survey of Ds Exonization to Enrich Transcriptomes and Proteomes in Plants
Li-yu Daisy Liu and Yuh-Chyang Charng
Evolutionary Bioinformatics 2012:8 575-587
Original Research | Published on 08 Oct 2012 | Video abstract

A Next-Generation Sequencing Approach to Study the Transcriptomic Changes During the Differentiation of Physarum at the Single-Cell Level
Israel Barrantes, Jeremy Leipzig and Wolfgang Marwan
Gene Regulation and Systems Biology 2012:6 127-137
Original Research | Published on 01 Oct 2012

Phylogenomic Study of Lipid Genes Involved in Microalgal Biofuel Production—Candidate Gene Mining and Metabolic Pathway Analyses
Namrata Misra, Prasanna Kumar Panda, Bikram Kumar Parida and Barada Kanta Mishra
Evolutionary Bioinformatics 2012:8 545-564
Original Research | Published on 20 Sep 2012

Evolution of Type II Antifreeze Protein Genes in Teleost Fish: A Complex Scenario Involving Lateral Gene Transfers and Episodic Directional Selection
Ulf Sorhannus
Evolutionary Bioinformatics 2012:8 535-544
Original Research | Published on 17 Sep 2012

Oscillation of Clock and Clock Controlled Genes Induced by Serum Shock in Human Breast Epithelial and Breast Cancer Cells: Regulation by Melatonin
S. Xiang, L. Mao, T. Duplessis, L. Yuan, R. Dauchy, E. Dauchy, D.E. Blask, T. Frasch and S.M. Hill
Breast Cancer: Basic and Clinical Research 2012:6 137-150
Original Research | Published on 13 Sep 2012

Significance Analysis of Microarrays (SAM) Offers Clues to Differences Between the Genomes of Adult Philadelphia Positive ALL and the Lymphoid Blast Transformation of CML
Colin Grace and Elisabeth P. Nacheva
Cancer Informatics 2012:11 173-183
Original Research | Published on 12 Sep 2012

Cloud Computing for Comparative Genomics with Windows Azure Platform
Insik Kim, Jae-Yoon Jung, Todd F. DeLuca, Tristan H. Nelson and Dennis P. Wall
Evolutionary Bioinformatics 2012:8 527-534
Technical Advance | Published on 30 Aug 2012

Haploinsufficiency of Tumor Suppressor Genes is Driven by the Cumulative Effect of microRNAs, microRNA Binding Site Polymorphisms and microRNA Polymorphisms: An In silico Approach
Mayakannan Manikandan, Ganesh Raksha and Arasambattu Kannan Munirajan
Cancer Informatics 2012:11 157-171
Perspective | Published on 29 Aug 2012

A De Novo Germline APC Mutation (3927del5) in a Patient with Familial Adenomatous Polyposis: Case Report and Literature Review
Simon B. Zeichner, Naveen Raj, Mike Cusnir, Michael Francavilla and Alicia Hirzel
Clinical Medicine Insights: Oncology 2012:6 315-323
Case report | Published on 29 Aug 2012 | Video abstract

Genetic Polymorphism of Plasmodium falciparum Merozoite Surface Protein-1 and -2 and Diversity of Drug Resistance Genes in Blood Donors from Bamako, Mali
Bolaji N. Thomas, Carlyn R. Petrella, Stephanie R. Crespo, Tanya J. Thakur, Joann M. Moulds and Dapa A. Diallo
Infectious Diseases: Research and Treatment 2012:5 49-57
Original Research | Published on 27 Aug 2012

Exome Sequencing Reveals Cause of Hypomyelinating Leukodystrophy
Darrell L. Dinwiddie, Neil A. Miller, Carol J. Saunders, Sarah E. Soden, Emily G. Farrow, Grace M. Hobson and Stephen F. Kingsmore
Journal of Genomes and Exomes 2012:1 7-14
Case report | Published on 20 Aug 2012

Expression and Epigenetic Change of the AR and FSHR Genes in the Granulosa Cells of Endometriosis Patients
Mika Hayashi, Yoshiki Yamashita, Atsushi Hayashi, Yoko Yoshida, Sachiko Kawabe, Masami Hayashi, Yoshito Terai, Hideki Kamegai and Masahide Ohmichi
Genetics & Epigenetics 2012:4 1-8
Original Research | Published on 14 Aug 2012

Meta-Analysis of General Bacterial Subclades in Whole-Genome Phylogenies Using Tree Topology Profiling
Thomas Meinel and Antje Krause
Evolutionary Bioinformatics 2012:8 489-525
Original Research | Published on 07 Aug 2012

Inference of Self-Regulated Transcriptional Networks by Comparative Genomics
Joseph P. Cornish, Fialelei Matthews, Julien R. Thomas and Ivan Erill
Evolutionary Bioinformatics 2012:8 449-461
Original Research | Published on 06 Aug 2012

Hypertension and Biliary Ductopenia in a Patient with Duplication of Exon 6 of the JAG1 Gene
J. Uberos, L. Moreno and A. Muñoz-Hoyos
Clinical Medicine Insights: Pediatrics 2012:6 61-66
Case report | Published on 26 Jul 2012

PhyloMarker—A Tool for Mining Phylogenetic Markers Through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny
Runhua Lei, Thaine W. Rowley, Lifeng Zhu, Carolyn A. Bailey, Shannon E. Engberg, Mindy L. Wood, Mary C. Christman, George H. Perry, Edward E. Louis Jr and Guoqing Lu
Evolutionary Bioinformatics 2012:8 423-435
Software review | Published on 23 Jul 2012

Insulin-Like Growth Factor 1 Gene Polymorphism and Breast Cancer Risk Among Arab Omani Women: A Case-Control Study
Kawthar Al-Ajmi, Shyam S. Ganguly, Adil Al-Ajmi, Zahid Al Mandhari and Mansour S. Al-Moundhri
Breast Cancer: Basic and Clinical Research 2012:6 103-112
Original Research | Published on 10 Jul 2012

Simple F Test Reveals Gene-Gene Interactions in Case-Control Studies
Guanjie Chen, Ao Yuan, Jie Zhou, Amy R. Bentley, Adebowale Adeyemo and Charles N. Rotimi
Bioinformatics and Biology Insights 2012:6 169-176
Short Report | Published on 02 Jul 2012

DNA Structural Properties in the Classification of Genomic Transcription Regulation Elements
Pieter Meysman, Kathleen Marchal and Kristof Engelen
Bioinformatics and Biology Insights 2012:6 155-168
Review | Published on 02 Jul 2012

Alport Syndrome: De Novo Mutation in the COL4A5 Gene Converting Glycine 1205 to Valine
Pilar Antón-Martín, Cristina Aparicio López, Soraya Ramiro-León, Sonia Santillán Garzón, Fernando Santos-Simarro and Belén Gil-Fournier
Clinical Medicine Insights: Pediatrics 2012:6 41-49
Case report | Published on 28 Jun 2012

Sequence of Rabbit (Oryctolagus cuniculus) DNA from the OryCun2.0 Donor does not Confirm a Frameshift in Exon 2 of IL4
Rose G. Mage and Michael G. Mage
Immunology and Immunogenetics Insights 2012:4 1-5
Short Report | Published on 27 Jun 2012

AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots
Muhammad Rashid, He Guangyuan, Yang Guangxiao, Javeed Hussain and Yan Xu
Evolutionary Bioinformatics 2012:8 321-355
Original Research | Published on 21 Jun 2012

A New Journal and a New Model for Structured Data Dissemination for an Era of Genomic Medicine
Stephen F. Kingsmore
Journal of Genomics and Exomics 2012:1 1-5
Editorial | Published on 21 Jun 2012

Cross-Genome Clustering of Human and C. elegans G-Protein Coupled Receptors
Balasubramanian Nagarathnam, Singaravelu Kalaimathy, Veluchamy Balakrishnan and Ramanathan Sowdhamini
Evolutionary Bioinformatics 2012:8 229-259
Original Research | Published on 19 Jun 2012

An Integrated Statistical Approach to Compare Transcriptomics Data Across Experiments: A Case Study on the Identification of Candidate Target Genes of the Transcription Factor PPARα
Mohammad Ohid Ullah, Michael Müller and Guido J.E.J. Hooiveld
Bioinformatics and Biology Insights 2012:6 145-154
Methodology | Published on 19 Jun 2012

Evolution of the RALF Gene Family in Plants: Gene Duplication and Selection Patterns
Jun Cao, and Feng Shi
Evolutionary Bioinformatics 2012:8 271-292
Original Research | Published on 11 Jun 2012

The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes
André E.R. Soares and Carlos G. Schrago
Bioinformatics and Biology Insights 2012:6 129-143
Original Research | Published on 31 May 2012

Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA
Michael R. Leuze, Tatiana V. Karpinets, Mustafa H. Syed, Alexander S. Beliaev and Edward C. Uberbacher
Gene Regulation and Systems Biology 2012:6 93-107
Original Research | Published on 30 May 2012 | Video abstract

Sequence and Structure of the Tobacco Hornworm, Manduca sexta, Transhydrogenase Gene
Matthew Pelletier, Laura Leigh French, Stephen Trinidad and Kurt Vandock,
International Journal of Insect Science 2012:4 1-6
Short Report | Published on 30 May 2012

Mitochondrial Genetic Differentiation of Spirlin (Actinopterigii: Cyprinidae) in the South Caspian Sea basin of Iran
Mahvash Seifali, Aziz Arshad, Faezeh Yazdani Moghaddam, Hamid Reza Esmaeili, Bahram H. Kiabi, Siti Khalijah Daud and Mansour Aliabadian
Evolutionary Bioinformatics 2012:8 219-227
Original Research | Published on 21 May 2012

Impact of the Partitioning Scheme on Divergence Times Inferred from Mammalian Genomic Data Sets
Carolina M. Voloch and Carlos G. Schrago
Evolutionary Bioinformatics 2012:8 207-218
Original Research | Published on 14 May 2012

In Silico Prediction for Regulation of Transcription Factors onTheir Shared Target Genes Indicates Relevant Clinical Implications in a Breast Cancer Population
Li-Yu D Liu, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Ming-Kwang Shyu, King-Jen Chang and Fon-Jou Hsieh
Cancer Informatics 2012:11 113-137
Methodology | Published on 19 Apr 2012

Mining Gene Ontology Data with AGENDA
Guvanch Ovezmyradov, Qianhao Lu and Martin C. Göpfert
Bioinformatics and Biology Insights 2012:6 63-67
Original Research | Published on 18 Apr 2012

Selection of Marker Genes Using Whole-Genome DNA Polymorphism Analysis
Harry M. Bohle and Toni Gabaldón
Evolutionary Bioinformatics 2012:8 161-169
Methodology | Published on 19 Mar 2012

easyPAC: A Tool for Fast Prediction, Testing and Reference Mapping of Degenerate PCR Primers from Alignments or Consensus Sequences
David Rosenkranz
Evolutionary Bioinformatics 2012:8 151-159
Software or database review | Published on 14 Mar 2012 | Video abstract

Gene Selection using a High-Dimensional Regression Model with Microarrays in Cancer Prognostic Studies
Shuhei Kaneko, Akihiro Hirakawa and Chikuma Hamada
Cancer Informatics 2012:11 29-39
Original Research | Published on 27 Feb 2012