Results 250-300 of 526 for Genomics

Evolutionary Modeling of Genotype-Phenotype Associations, and Application to Primate Coding and Non-coding mtDNA Rate Variation
Timothy D. O'Connor and Nicholas I. Mundy
Evolutionary Bioinformatics 2013:9 301-316
Original Research | Published on 28 Jul 2013

Identification of Differentially Evolved Genes: An Alternative Approach to Detection of Accelerated Molecular Evolution from Genome-Wide Comparative Data
Kyu-Won Kim, David W. Burt, Heebal Kim and Seoae Cho
Evolutionary Bioinformatics 2013:9 285-299
Methodology | Published on 28 Jul 2013

DNA Demethylation Pathways: Recent Insights
Cong-jun Li
Genetics & Epigenetics 2013:5 43-49
Review | Published on 28 Jul 2013

Regulation of Somatic Stem Cell Function by DNA Methylation and Genomic Imprinting
Mo Li, Na Young Kim, Shigeo Masuda and Juan Carlos Izpisua Belmonte
Cell & Tissue Transplantation & Therapy 2013:5 19-23
Review | Published on 23 Jul 2013

Association of Putative Members to Family of Mosquito Odorant Binding Proteins: Scoring Scheme Using Fuzzy Functional Templates and Cys Residue Positions
Malini Manoharan, Kannan Sankar, Bernard Offmann and Sowdhamini Ramanathan
Bioinformatics and Biology Insights 2013:7 231-251
Original Research | Published on 22 Jul 2013

Text Categorization of Heart, Lung, and Blood Studies in the Database of Genotypes and Phenotypes (dbGaP) Utilizing n-grams and Metadata Features
Mindy K. Ross, Ko-Wei Lin, Karen Truong, Abhishek Kumar and Mike Conway
Biomedical Informatics Insights 2013:6 35-45
Original Research | Published on 22 Jul 2013

Conserved Nonsense-Prone CpG Sites in Apoptosis-Regulatory Genes: Conditional Stop Signs on the Road to Cell Death
Yongzhong Zhao and Richard J. Epstein
Evolutionary Bioinformatics 2013:9 275-283
Original Research | Published on 14 Jul 2013

Bioinformatics and Gene Network Analyses of the Swine Mammary Gland Transcriptome during Late Gestation
Wangsheng Zhao, Khuram Shahzad, Mingfeng Jiang, Daniel E. Graugnard, Sandra L. Rodriguez-Zas, Jun Luo, Juan J. Loor and Walter L. Hurley
Bioinformatics and Biology Insights 2013:7 193-216
Original Research | Published on 14 Jul 2013

SARP: A Novel Algorithm to Assess Compositional Biases in Protein Sequences
Kirill S. Antonets and Anton A. Nizhnikov
Evolutionary Bioinformatics 2013:9 263-273
Rapid Communication | Published on 11 Jul 2013

Effective Encoding for DNA Sequence Visualization Based on Nucleotide’s Ring Structure
A.T.M. Golam Bari, Mst. Rokeya Reaz, A.K.M. Tauhidul Islam, Ho-Jin Choi and Byeong-Soo Jeong
Evolutionary Bioinformatics 2013:9 251-261
Original Research | Published on 07 Jul 2013

CEBPG Exhibits Allele-Specific Expression in Human Bronchial Epithelial Cells
Thomas M. Blomquist, Ronald D. Brown, Erin L. Crawford, Ivana de la Serna, Kandace Williams, Youngsook Yoon, Dawn-Alita Hernandez and James C. Willey
Gene Regulation and Systems Biology 2013:7 125-138
Original Research | Published on 04 Jul 2013

Molecular Evolution and Functional Divergence of Soluble Starch Synthase Genes in Cassava (Manihot Esculenta Crantz)
Zefeng Yang, Yifan Wang, Shuhui Xu, Chenwu Xu and Changjie Yan
Evolutionary Bioinformatics 2013:9 239-249
Original Research | Published on 03 Jul 2013

Unexplored Potentials of Epigenetic Mechanisms of Plants and Animals—Theoretical Considerations
Istvan Seffer, Zoltan Nemeth, Gyula Hoffmann, Robert Matics, A. Gergely Seffer and Akos Koller
Genetics & Epigenetics 2013:5 23-41
Review | Published on 30 Jun 2013

Advances, Challenges and Prospects in Small RNA Mediated Approaches of Virus Resistance in Plants
Surekha Agarwal and Satendra K Mangrauthia
Journal of Genomes and Exomes 2013:2 43-62
Review | Published on 18 Jun 2013

Dietary Lipid During Late-Pregnancy and Early-Lactation to Manipulate Metabolic and Inflammatory Gene Network Expression in Dairy Cattle Liver with a Focus on PPARs
Haji Akbar, Eduardo Schmitt, Michael A. Ballou, Marcio N. Corrêa, Edward J. DePeters and Juan J. Loor
Gene Regulation and Systems Biology 2013:7 103-123
Original Research | Published on 11 Jun 2013

Recent Progress in Mouse Models for Tumor Suppressor Genes and its Implications in Human Cancer
Kazushi Inoue, Elizabeth A. Fry, and Pankaj Taneja
Clinical Medicine Insights: Oncology 2013:7 103-122
Review | Published on 03 Jun 2013

Sequencing and Computational Approaches to Identification and Characterization of Microbial Organisms
Brijesh Singh Yadav, Venkateswarlu Ronda, Dinesh P. Vashista and Bhaskar Sharma
Biomedical Engineering and Computational Biology 2013:5 43-49
Review | Published on 20 May 2013

Association Between a Multi-Locus Genetic Risk Score and Inflammatory Bowel Disease
Pingzhao Hu, Aleixo M. Muise, Xiang Xing, John H. Brumell, Mark S. Silverberg and Wei Xu
Bioinformatics and Biology Insights 2013:7 143-152
Short Report | Published on 19 May 2013

Novel Integrative Genomics Approach for Associating GWAS Information with Intrinsic Subtypes of Breast Cancer
Chindo Hicks, Tejaswi Koganti, Alexandra S. Brown, Jesus Monico, Kandis Backus and Lucio Miele
Cancer Informatics 2013:12 125-142
Original Research | Published on 15 May 2013

Investigation of dmyc Promoter and Regulatory Regions
Jasmine Kharazmi and Cameron Moshfegh
Gene Regulation and Systems Biology 2013:7 85-102
Original Research | Published on 15 May 2013

Top-Down Clustering for Protein Subfamily Identification
Eduardo P. Costa, Celine Vens and Hendrik Blockeel
Evolutionary Bioinformatics 2013:9 185-202
Original Research | Published on 06 May 2013

Inter-Laboratory Variability in Array-Based RNA Quantification Methods
Victoria Y. Wong and Manuel X. Duval
Genomics Insights 2013:6 13-24
Rapid Communication | Published on 06 May 2013

Yin Yang 1 and Adipogenic Gene Network Expression in Longissimus Muscle of Beef Cattle in Response to Nutritional Management
Sonia J. Moisá, Daniel W. Shike, William T. Meteer, Duane Keisler, Dan B. Faulkner and Juan J. Loor
Gene Regulation and Systems Biology 2013:7 71-83
Original Research | Published on 16 Apr 2013

The Use of Metagenomic Approaches to Analyze Changes in Microbial Communities
Girish Neelakanta and Hameeda Sultana
Microbiology Insights 2013:6 37-48
Review | Published on 16 Apr 2013

Structured Genome-Scale Variant and Clinical Data Reporting for Meta-Analysis in an Era of Genomic Medicine
Darrell L. Dinwiddie, Carol J. Saunders, Emily G. Farrow, Sarah E. Soden, Neil A. Miller and Stephen F. Kingsmore
Journal of Genomes and Exomes 2013:2 31-42
Opinion | Published on 07 Apr 2013

Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification
Joo Heon Shin, Robert W. Li, Yuan Gao, Derek M. Bickhart, George E. Liu, Weizhong Li, Sitao Wu and Cong-jun Li
Gene Regulation and Systems Biology 2013:7 57-70
Original Research | Published on 26 Mar 2013

A Comprehensive Profile of ChIP-Seq-Based STAT1 Target Genes Suggests the Complexity of STAT1-Mediated Gene Regulatory Mechanisms
Jun-ichi Satoh and Hiroko Tabunoki
Gene Regulation and Systems Biology 2013:7 41-56
Original Research | Published on 26 Mar 2013

Expanding the Phenotypic Spectrum of Nicotinamide Nucleotide Transhydrogenase (NNT) Mutations and using Whole Exome Sequencing to Discover Potential Disease Modifiers
Caroline Hasselmann, Johnny Deladoëy, Jean-Marc Vuissoz, Lysanne Patry, Najmeh Alirezaie, Jeremy Schwartzentruber, FORGE Canada Consortium, Cheri L. Deal, Guy Van Vliet, Jacek Majewski and Mark E. Samuels
Journal of Genomes and Exomes 2013:2 19-30
Original Research | Published on 18 Mar 2013

EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes
Tanja Magoc, Derrick Wood and Steven L. Salzberg,
Evolutionary Bioinformatics 2013:9 127-136
Technical Advance | Published on 10 Mar 2013

Loss of Imprinting of IGF2 Gene in the Chorionic Tissues of Spontaneously Eliminated Human Embryos
Danuta Zastavna, Halyna Makukh, Bogdan Tretjak, Olena Bilevych and Miroslaw Tyrka
Genetics & Epigenetics 2013:5 17-22
Original Research | Published on 10 Mar 2013

Computational Small RNA Prediction in Bacteria
Jayavel Sridhar and Paramasamy Gunasekaran
Bioinformatics and Biology Insights 2013:7 83-95
Review | Published on 07 Mar 2013

The DNA Habitat and its RNA Inhabitants: At the Dawn of RNA Sociology
Luis P. Villarreal and Guenther Witzany
Genomics Insights 2013:6 1-12
Perspective | Published on 04 Mar 2013

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-off on Phenotype Robustness in Biological Networks Part I: Gene Regulatory Networks in Systems and Evolutionary Biology
Bor-Sen Chen and Ying-Po Lin
Evolutionary Bioinformatics 2013:9 43-68
Original Research | Published on 26 Feb 2013

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Tradeoff on Phenotype Robustness in Biological Networks Part II: Ecological Networks
Bor-Sen Chen and Ying-Po Lin
Evolutionary Bioinformatics 2013:9 69-85
Original Research | Published on 26 Feb 2013

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-offs on Phenotype Robustness in Biological Networks. Part III: Synthetic Gene Networks in Synthetic Biology
Bor-Sen Chen and Ying-Po Lin
Evolutionary Bioinformatics 2013:9 87-109
Original Research | Published on 26 Feb 2013

A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences
Riccardo Percudani
Bioinformatics and Biology Insights 2013:7 55-72
Original Research | Published on 24 Feb 2013

Global Consensus Theorem and Self-Organized Criticality: Unifying Principles for Understanding Self-Organization, Swarm Intelligence and Mechanisms of Carcinogenesis
Simon Rosenfeld
Gene Regulation and Systems Biology 2013:7 23-39
Perspective | Published on 20 Feb 2013

Effects of Copper and Cadmium Exposure on mRNA Expression of Catalase, Glutamine Synthetase, Cytochrome P450 and Heat Shock Protein 70 in Tambaqui Fish (Colossoma Macropomum)
Frida Mesel Casanova, Rubens Tomio Honda, Monica Stropa Ferreira-Nozawa, Paulo Henrique Rocha Aride and Sérgio Ricardo Nozawa
Gene Expression to Genetical Genomics 2013:6 1-8
Short Report | Published on 19 Feb 2013

Systematic Identification and Definition of Consistently Well-Characterized Protein-Coding Exons Using Next Generation Sequencing Technology
Praveen F. Cherukuri, Murat Sincan, John P. Accardi, Karin Fuentes Fajardo, Thomas C. Markello, Cornelius F. Boerkoel, Cynthia J. Tifft, William A. Gahl and David Adams
Journal of Genomes and Exomes 2013:2 1-18
Original Research | Published on 18 Feb 2013

Classification of Tumor Samples from Expression Data Using Decision Trunks
Benjamin Ulfenborg, Karin Klinga-Levan and Björn Olsson
Cancer Informatics 2013:12 53-66
Original Research | Published on 13 Feb 2013

Preimplantation Genetic Testing in the 21st Century: Uncharted Territory
Paul R. Brezina, MD, MBA
Clinical Medicine Insights: Reproductive Health 2013:7 17-21
Review | Published on 10 Feb 2013

Epigenetic Effect of Chronic Stress on Dopamine Signaling and Depression
Sofia Moriam and Mahbub E. Sobhani
Genetics & Epigenetics 2013:5 11-16
Review | Published on 10 Feb 2013

Implications of Systemic Dysfunction for the Etiology of Malignancy
Sarah S. Knox and Michael F. Ochs
Gene Regulation and Systems Biology 2013:7 11-22
Perspective | Published on 06 Feb 2013

An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer
Chindo Hicks, Ranjit Kumar, Antonio Pannuti, Kandis Backus, Alexandra Brown, Jesus Monico and Lucio Miele
Cancer Informatics 2013:12 1-20
Original Research | Published on 29 Jan 2013

A Proximity-Based Method to Identify Genomic Regions Correlated with a Continuously Varying Environmental Variable
Cornelia Di Gaetano, Giuseppe Matullo, Alberto Piazza, Moreno Ursino and Mauro Gasparini
Evolutionary Bioinformatics 2013:9 29-42
Methodology | Published on 29 Jan 2013

Musculo-Skeletal Abnormalities in Patients with Marfan Syndrome
Ali Al Kaissi, Elisabeth Zwettler, Rudolf Ganger, Simone Schreiner, Klaus Klaushofer and Franz Grill
Clinical Medicine Insights: Arthritis and Musculoskeletal Disorders 2013:6 1-9
Consise Review | Published on 29 Jan 2013

Acute Psychosocial Stress-Mediated Changes in the Expression and Methylation of Perforin in Chronic Fatigue Syndrome
Virginia R. Falkenberg, Toni Whistler, Janna R. Murray, Elizabeth R. Unger and Mangalathu S. Rajeevan
Genetics & Epigenetics 2013:5 1-9
Original Research | Published on 28 Jan 2013

TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats
Tomasz Gambin, Michał Startek, Krzysztof Walczak, Jarosław Paszek, Dariusz Grzebelus and Anna Gambin
Evolutionary Bioinformatics 2013:9 17-27
Database review | Published on 22 Jan 2013

Extensive Ethnogenomic Diversity of Endothelial Nitric Oxide Synthase (eNOS) Polymorphisms
Bolaji N. Thomas, Tanya J. Thakur, Li Yi, Aldiouma Guindo, Dapa A. Diallo and Jurg Ott,
Gene Regulation and Systems Biology 2013:7 1-10
Original Research | Published on 15 Jan 2013

PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation
Henning Lenz and Volker Knoop
Bioinformatics and Biology Insights 2013:7 1-19
Technical Advance | Published on 10 Jan 2013