Results 450-500 of 790 for Bioinformatics

Self-Calibrated Warping for Mass Spectra Alignment
Q. Peter He, Jin Wang, James A. Mobley, Joshua Richman and William E. Grizzle
Cancer Informatics 2011:10 65-82
Methodology | Published on 22 Mar 2011

Phylogenetic Analysis of Kindlins Suggests Subfunctionalization of an Ancestral Unduplicated Kindlin into Three Paralogs in Vertebrates
Ammad Aslam Khan, Axel Janke, Takashi Shimokawa and Hongquan Zhang
Evolutionary Bioinformatics 2011:7 7-19
Original Research | Published on 22 Mar 2011

FORS-D Analysis in P. falciparum can Differentiate Classes of Genes Under Selection
Atish Kathpal, Balakota Reddy Patakottu and Swati Patankar
Evolutionary Bioinformatics 2011:7 21-29
Original Research | Published on 20 Mar 2011

Reproducibility of SELDI Spectra Across Time and Laboratories
Lixia Diao, Charlotte H. Clarke, Kevin R. Coombes, Stanley R. Hamilton, Jack Roth, Li Mao, Bogdan Czerniak, Keith A. Baggerly, Jeffrey S. Morris, Eric T. Fung and Robert C. Bast Jr
Cancer Informatics 2011:10 45-64
Original Research | Published on 14 Mar 2011

SOLiDzipper: A High Speed Encoding Method for the Next-Generation Sequencing Data
Young Jun Jeon, Sang Hyun Park, Sung Min Ahn and Hee Joung Hwang
Evolutionary Bioinformatics 2011:7 1-6
Software or database review | Published on 10 Mar 2011

Extension of Cox Proportional Hazard Model for Estimation of Interrelated Age-Period-Cohort Effects on Cancer Survival
Tengiz Mdzinarishvili, Michael X. Gleason, Leo Kinarsky and Simon Sherman
Cancer Informatics 2011:10 31-44
Methodology | Published on 23 Feb 2011

In silico Analysis of Combinatorial microRNA Activity Reveals Target Genes and Pathways Associated with Breast Cancer Metastasis
Alan A. Dombkowski, Zakia Sultana, Douglas B. Craig and Hasan Jamil
Cancer Informatics 2011:10 13-29
Methodology | Published on 17 Feb 2011

In silico Analysis of Combinatorial microRNA Activity Reveals Target Genes and Pathways Associated with Breast Cancer Metastasis
Alan A. Dombkowski, Zakia Sultana, Douglas B. Craig and Hasan Jamil
Cancer Informatics 2011:10 13-29
Methodology | Published on 17 Feb 2011

Identification of Drought-Responsive Universal Stress Proteins in Viridiplantae
Raphael D. Isokpehi, Shaneka S. Simmons, Hari H.P. Cohly, Stephen I.N. Ekunwe, Gregorio B. Begonia and Wellington K. Ayensu
Bioinformatics and Biology Insights 2011:5 41-58
Original Research | Published on 07 Feb 2011

Identification of Drought-Responsive Universal Stress Proteins in Viridiplantae
Raphael D. Isokpehi, Shaneka S. Simmons, Hari H.P. Cohly, Stephen I.N. Ekunwe, Gregorio B. Begonia and Wellington K. Ayensu
Bioinformatics and Biology Insights 2011:5 41-58
Original Research | Published on 07 Feb 2011

Skin Cancer Recognition by Using a Neuro-Fuzzy System
Bareqa Salah, Mohammad Alshraideh, Rasha Beidas and Ferial Hayajneh
Cancer Informatics 2011:10 1-11
Original Research | Published on 02 Feb 2011

Conceptual Aspects of Large Meta-Analyses with Publicly Available Microarray Data: A Case Study in Oncology
Markus Schmidberger, Sabine Lennert and Ulrich Mansmann
Bioinformatics and Biology Insights 2011:5 13-39
Case report | Published on 23 Jan 2011

Different Functional Gene Clusters in Yeast have Different Spatial Distributions of the Transcription Factor Binding Sites
Wei-Sheng Wu
Bioinformatics and Biology Insights 2011:5 1-11
Original Research | Published on 12 Jan 2011

Different Functional Gene Clusters in Yeast have Different Spatial Distributions of the Transcription Factor Binding Sites
Wei-Sheng Wu
Bioinformatics and Biology Insights 2011:5 1-11
Original Research | Published on 12 Jan 2011

Cost-Effective Cloud Computing: A Case Study Using the Comparative Genomics Tool, Roundup
Parul Kudtarkar, Todd F. DeLuca, Vincent A. Fusaro, Peter J. Tonellato and Dennis P. Wall
Evolutionary Bioinformatics 2010:6 197-203
Short Report | Published on 22 Dec 2010

PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences
Kessy Abarenkov, Leho Tedersoo, R. Henrik Nilsson, Kai Vellak, Irja Saar, Vilmar Veldre, Erast Parmasto, Marko Prous, Anne Aan, Margus Ots, Olavi Kurina, Ivika Ostonen, Janno Jõgeva, Siim Halapuu, Kadri Põldmaa, Märt Toots, Jaak Truu, Karl-Henrik Larsson and Urmas Kõljalg
Evolutionary Bioinformatics 2010:6 189-196
Software or database review | Published on 16 Dec 2010

PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences
Kessy Abarenkov, Leho Tedersoo, R. Henrik Nilsson, Kai Vellak, Irja Saar, Vilmar Veldre, Erast Parmasto, Marko Prous, Anne Aan, Margus Ots, Olavi Kurina, Ivika Ostonen, Janno Jõgeva, Siim Halapuu, Kadri Põldmaa, Märt Toots, Jaak Truu, Karl-Henrik Larsson and Urmas Kõljalg
Evolutionary Bioinformatics 2010:6 189-196
Software or database review | Published on 16 Dec 2010

Biological Functions of the Genes in the Mammaprint Breast Cancer Profile Reflect the Hallmarks of Cancer
Sun Tian, Paul Roepman, Laura J van’t Veer, Rene Bernards, Femke de Snoo and Annuska M Glas
Biomarker Insights 2010:5 129-138
Original Research | Published on 28 Nov 2010

Sinusoidal Cox Regression—A Rare Cancer Example
Jimmy Thomas Efird
Cancer Informatics 2010:9 265-279
Methodology | Published on 28 Nov 2010

Periodicity Detection Method for Small-Sample Time Series Datasets
Daisuke Tominaga
Bioinformatics and Biology Insights 2010:4 127-136
Methodology | Published on 22 Nov 2010

Cross-platform Comparison of Two Pancreatic Cancer Phenotypes
Robert B. Scharpf, Christine A. Iacobuzio-Donahue, Leslie Cope, Ingo Ruczinski, Elizabeth Garrett-Mayer, Sindhu Lakkur, Domenico Campagna and Giovanni Parmigiani
Cancer Informatics 2010:9 257-264
Original Research | Published on 01 Nov 2010

Computational Identification of Anthocyanin-Specific Transcription Factors using a Rice Microarray and Maximum Boundary Range Algorithm
Chang Kug Kim, Shoshi Kikuchi, Jang Ho Hahn, Soo Chul Park, Yong Hwan Kim and Byun Woo Lee
Evolutionary Bioinformatics 2010:6 133-141
Original Research | Published on 20 Oct 2010

EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics
Michael S. Barker, Katrina M. Dlugosch, Louie Dinh, R. Sashikiran Challa, Nolan C. Kane, Matthew G. King and Loren H. Rieseberg
Evolutionary Bioinformatics 2010:6 143-149
Short Report | Published on 20 Oct 2010

Blasted Cell Line Names
Jing Wang, Lauren A. Byers, John S. Yordy, Wenbin Liu, Li Shen, Keith A. Baggerly, Uma Giri, Jeffrey N. Myers, K. Kian Ang, Michael D. Story, Luc Girard, John D. Minna, John V. Heymach and Kevin R. Coombes
Cancer Informatics 2010:9 251-255
Short Report | Published on 14 Oct 2010

Estimating Shared Copy Number Aberrations for Array CGH Data: The Linear-Median Method
Y.-X. Lin, V. Baladandayuthapani, V. Bonato and K.-A. Do
Cancer Informatics 2010:9 229-249
Original Research | Published on 12 Oct 2010

Candidate Single Nucleotide Polymorphism Markers for Arsenic Responsiveness of Protein Targets
Raphael D. Isokpehi, Hari H.P. Cohly, Matthew N. Anyanwu, Rajendram V. Rajnarayanan, Paul B. Tchounwou, Udensi K. Udensi and Barbara E. Graham-Evans
Bioinformatics and Biology Insights 2010:4 99-111
Original Research | Published on 11 Oct 2010

Candidate Single Nucleotide Polymorphism Markers for Arsenic Responsiveness of Protein Targets
Raphael D. Isokpehi, Hari H.P. Cohly, Matthew N. Anyanwu, Rajendram V. Rajnarayanan, Paul B. Tchounwou, Udensi K. Udensi and Barbara E. Graham-Evans
Bioinformatics and Biology Insights 2010:4 99-111
Original Research | Published on 11 Oct 2010

An Allergen Portrait Gallery: Representative Structures and an Overview of IgE Binding Surfaces
Catherine H. Schein, Ovidiu Ivanciuc, Terumi Midoro-Horiuti, Randall M. Goldblum and Werner Braun
Bioinformatics and Biology Insights 2010:4 113-125
Review | Published on 11 Oct 2010

BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies
Mike L. Smith and Andy G. Lynch
Cancer Informatics 2010:9 217-227
Short Report | Published on 29 Sep 2010

Identifying the Combinatorial Effects of Histone Modifications by Association Rule Mining in Yeast
Jiang Wang, Xianhua Dai, Qian Xiang, Yangyang Deng, Jihua Feng, Zhiming Dai and Caisheng He
Evolutionary Bioinformatics 2010:6 113-131
Original Research | Published on 20 Sep 2010

Expression of Metabolic, Tissue Remodeling, Oxidative Stress, and Inflammatory Pathways in Mammary Tissue During Involution in Lactating Dairy Cows
Paola Piantoni, Ping Wang, James K. Drackley, Walter L. Hurley and Juan J. Loor
Bioinformatics and Biology Insights 2010:4 85-97
Original Research | Published on 20 Sep 2010

Expression of Metabolic, Tissue Remodeling, Oxidative Stress, and Inflammatory Pathways in Mammary Tissue During Involution in Lactating Dairy Cows
Paola Piantoni, Ping Wang, James K. Drackley, Walter L. Hurley and Juan J. Loor
Bioinformatics and Biology Insights 2010:4 85-97
Original Research | Published on 20 Sep 2010

A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA
Markus Göker, Guido W. Grimm, Alexander F. Auch, Ralf Aurahs and Michal Kučera
Evolutionary Bioinformatics 2010:6 97-112
Original Research | Published on 09 Sep 2010

A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA
Markus Göker, Guido W. Grimm, Alexander F. Auch, Ralf Aurahs and Michal Kučera
Evolutionary Bioinformatics 2010:6 97-112
Original Research | Published on 09 Sep 2010

Heterogeneity Between Ducts of the Same Nuclear Grade Involved by Duct Carcinoma In Situ (DCIS) of the Breast
Naomi A. Miller, Judith-Anne W. Chapman, Jin Qian, William A. Christens-Barry, Yuejiao Fu, Yan Yuan, H. Lavina A. Lickley and David E. Axelrod
Cancer Informatics 2010:9 209-216
Original Research | Published on 07 Sep 2010

Comparative in Silico Analyses of Cpeb1–4 with Functional Predictions
Xiang-Ping Wang and Nigel G.F. Cooper
Bioinformatics and Biology Insights 2010:4 61-83
Original Research | Published on 30 Aug 2010

LTR: Linear Cross-Platform Integration of Microarray Data
Paul C. Boutros
Cancer Informatics 2010:9 197-208
Original Research | Published on 27 Aug 2010

Professional Networks in the Life Sciences: Linking the Linked
Thomas S. Deisboeck and Jonathan Sagotsky
Cancer Informatics 2010:9 189-195
Perspective | Published on 25 Aug 2010

Weibull-like Model of Cancer Development in Aging
Tengiz Mdzinarishvili and Simon Sherman
Cancer Informatics 2010:9 179-188
Original Research | Published on 24 Aug 2010

Inhibition of Antiapoptotic BCL-XL, BCL-2, and MCL-1 Proteins by Small Molecule Mimetics
D.S. Dalafave and G. Prisco
Cancer Informatics 2010:9 169-177
Original Research | Published on 12 Aug 2010

Relationship between Selected Socio-Demographic Factors and Cancer of Oral Cavity - A Case Control Study
Abdoul Hossain Madani, Madhurima Dikshit, Debanshu Bhaduri, Abdolreza Sotoodeh Jahromi and Teamur Aghamolaei
Cancer Informatics 2010:9 163-168
Original Research | Published on 11 Aug 2010

Suicide Note Classification Using Natural Language Processing: A Content Analysis
John Pestian, Henry Nasrallah, Pawel Matykiewicz, Aurora Bennett and Antoon Leenaars
Biomedical Informatics Insights 2010:3 19-28
Original Research | Published on 04 Aug 2010

Enhancing Disease Surveillance Event Communication Among Jurisdictions
Nathaniel R. Tabernero, Wayne A. Loschen, Joel Jorgensen, Joshua Suereth, Jacqueline S. Coberly,  Rekha S. Holtry, Marvin L. Sikes, Steven M. Babin and Sheryl L. Happel Lewis
Biomedical Informatics Insights 2009:2 31-41

Original Research | Published on 22 Jan 2010

Dual KS: Defining Gene Sets with Tissue Set Enrichment Analysis
Yarong Yang, Eric J. Kort, Nader Ebrahimi, Zhongfa Zhang and Bin T. Teh
Cancer Informatics 2010:9 1-9
Methodology | Published on 21 Jan 2010

Modeling Prognostic Factors in Resectable Pancreatic Adenocarcinomas
Taxiarchis Botsis, Valsamo K. Anagnostou, Gunnar Hartvigsen, George Hripcsak and Chunhua Weng
Cancer Informatics 2009:7 281-291
Original Research | Published on 20 Jan 2010

A Novel Approach for Analysis of the Log-Linear Age-Period-Cohort Model: Application to Lung Cancer Incidence
Tengiz Mdzinarishvili, Michael X. Gleason and Simon Sherman
Cancer Informatics 2009:7 271-280
Original Research | Published on 14 Dec 2009

Domain Organization of Long Autotransporter Signal Sequences
Jan A. Hiss and Gisbert Schneider
Bioinformatics and Biology Insights 2009:3 189-204
Original Research | Published on 14 Dec 2009

In silico Analysis of Human Telomerase Reverse Transcriptase (hTERT ) Gene: Identification of a Distant Homolog of Melanoma Antigen Family Gene (MAGE)
Ruhul Amin, Jesmin, Hasan Jamil and M. Anwar Hossain
Cancer Informatics 2009:7 171-181
Hypothesis | Published on 24 Nov 2009

In silico Analysis of Human Telomerase Reverse Transcriptase (hTERT ) Gene: Identification of a Distant Homolog of Melanoma Antigen Family Gene (MAGE)
Ruhul Amin, Jesmin, Hasan Jamil and M. Anwar Hossain
Cancer Informatics 2009:7 171-181
Hypothesis | Published on 24 Nov 2009

An Efficient Method to Identify Conditionally Activated Transcription Factors and their Corresponding Signal Transduction Pathway Segments
Haiyan Hu
Bioinformatics and Biology Insights 2009:3 179-187
Original Research | Published on 17 Nov 2009