Results 200-250 of 790 for Bioinformatics

Review of Current Methods, Applications, and Data Management for the Bioinformatics Analysis of Whole Exome Sequencing
Riyue Bao, Lei Huang, Jorge Andrade, Wei Tan, Warren A. Kibbe, Hongmei Jiang and Gang Feng
Cancer Informatics 2014:Suppl. 2 67-82
Review | Published on 21 Sep 2014

Interactions Among Plant Transcription Factors Regulating Expression of Stress-responsive Genes
Sony Malhotra and R. Sowdhamini
Bioinformatics and Biology Insights 2014:8 193-198
Original Research | Published on 10 Sep 2014

Molecular Network Analysis Suggests a Logical Hypothesis for the Pathological Role of C9orf72 in Amyotrophic Lateral Sclerosis/Frontotemporal Dementia
Jun-ichi Satoh, Yoji Yamamoto, Shouta Kitano, Mika Takitani, Naohiro Asahina and Yoshihiro Kino
Journal of Central Nervous System Disease 2014:6 69-78
Original Research | Published on 24 Aug 2014

Computational Identification of Dengue Virus MicroRNA-Like Structures and their Cellular Targets
Maicol Ospina-Bedoya, Natalia Campillo-Pedroza, Juan P. Franco-Salazar and Juan C. Gallego-Gómez
Bioinformatics and Biology Insights 2014:8 169-176
Short Report | Published on 14 Aug 2014

iteRates: An R Package for Implementing a Parametric Rate Comparison on Phylogenetic Trees
James A. Fordyce, Premal Shah and Benjamin M. Fitzpatrick
Evolutionary Bioinformatics 2014:10 127-130
Rapid Communication | Published on 03 Aug 2014

Integrative Pathway Analysis Using Graph-Based Learning with Applications to TCGA Colon and Ovarian Data
Andrew E. Dellinger, Andrew B. Nixon and Herbert Pang
Cancer Informatics 2014:13 Suppl. 4 1-9
Technical Advance | Published on 28 Jul 2014

An In-depth Analysis of a Multilocus Phylogeny Identifies leuS As a Reliable Phylogenetic Marker for the Genus Pantoea
James T. Tambong, Renlin Xu, Cynthia-Anne Kaneza and Jean-Claude Nshogozabahizi
Evolutionary Bioinformatics 2014:10 115-125
Original Research | Published on 27 Jul 2014

On the Significance of Fuzzification of the N and M in Cancer Staging
Sara A. Yones, Ahmed S. Moussa, Hesham Hassan and Nelly H. Alieldin
Cancer Informatics 2014:13 85-91
Methodology | Published on 24 Jul 2014

Regulation of Human PAX6 Expression by miR-7
Maria Needhamsen, Robert B. White, Keith M. Giles, Sarah A. Dunlop and Meghan G. Thomas
Evolutionary Bioinformatics 2014:10 107-113
Original Research | Published on 14 Jul 2014

Influence of Modularity and Regularity on Disparity of Atelostomata Sea Urchins
Juan López-Sauceda, Juan Malda-Barrera, Alfredo Laguarda-Figueras, Francisco Solís-Marín and José L. Aragón
Evolutionary Bioinformatics 2014:10 97-105
Original Research | Published on 29 Jun 2014

In Silico Studies of Medicinal Compounds Against Hepatitis C Capsid Protein from North India
Shilu Mathew, Muhammad Faheem, Govindaraju Archunan, Muhammad Ilyas, Nargis Begum, Syed Jahangir, Ishtiaq Qadri, Mohammad Al Qahtani and Shiny Mathew
Bioinformatics and Biology Insights 2014:8 159-168
Original Research | Published on 23 Jun 2014

Similarity/Dissimilarity Analysis of Protein Sequences Based on a New Spectrum-Like Graphical Representation
Yuhua Yao, Shoujiang Yan, Huimin Xu, Jianning Han, Xuying Nan, Ping-an He and Qi Dai
Evolutionary Bioinformatics 2014:10 87-96
Original Research | Published on 12 Jun 2014

A Protocol for mtGenome Analysis on Large Sample Numbers
Igor G. Hamoy, André M. Ribeiro-dos-Santos, Luiz Alvarez, Silvanira Barbosa, Artur Silva, Sidney Santos, Leonor Gusmão and Ândrea Ribeiro-dos-Santos
Bioinformatics and Biology Insights 2014:8 127-134
Original Research | Published on 11 Jun 2014

The Purine Bias of Coding Sequences is Determined by Physicochemical Constraints on Proteins
Miguel Ponce de Leon, Antonio Basilio de Miranda, Fernando Alvarez-Valin and Nicolas Carels
Bioinformatics and Biology Insights 2014:8 93-108
Original Research | Published on 20 May 2014

Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates
Beatriz Mello and Carlos G. Schrago
Evolutionary Bioinformatics 2014:10 79-85
Original Research | Published on 07 May 2014

A Multistep Screening Method to Identify Genes Using Evolutionary Transcriptome of Plants
Chang-Kug Kim, Hye-Min Lim, Jong-Kuk Na, Ji-Weon Choi, Seong-Han Sohn, Soo-Chul Park, Young-Hwan Kim, Yong-Kab Kim and Dool-Yi Kim
Evolutionary Bioinformatics 2014:10 69-78
Original Research | Published on 21 Apr 2014

Promise and Reality in the Expanding Field of Network Interaction Analysis: Metabolic Networks
Susanna Bazzani
Bioinformatics and Biology Insights 2014:8 83-91
Commentary | Published on 16 Apr 2014

Computational Insights of the Interaction among Sea Anemones Neurotoxins and Kv1.3 Channel
Angélica Sabogal-Arango, George E. Barreto, David Ramírez-Sánchez, Juan González-Mendoza, Viviana Barreto, Ludis Morales and Janneth González
Bioinformatics and Biology Insights 2014:8 73-81
Original Research | Published on 15 Apr 2014

Nonlinear Optical Microscopy Signal Processing Strategies in Cancer
Javier Adur, Hernandes F. Carvalho, Carlos L. Cesar and Víctor H. Casco
Cancer Informatics 2014:13 67-76
Review | Published on 02 Apr 2014

TreSpEx—Detection of Misleading Signal in Phylogenetic Reconstructions Based on Tree Information
Torsten H. Struck
Evolutionary Bioinformatics 2014:10 51-67
Original Research | Published on 31 Mar 2014

An In Silico Approach for Characterization of an Aminoglycoside Antibiotic-Resistant Methyltransferase Protein from Pyrococcus furiosus (DSM 3638)
Arafat Rahman Oany, Tahmina Pervin Jyoti and Shah Adil Ishtiyaq Ahmad
Bioinformatics and Biology Insights 2014:8 65-72
Original Research | Published on 20 Mar 2014

Bioinformatic Dissecting of TP53 Regulation Pathway Underlying Butyrate-induced Histone Modification in Epigenetic Regulation
Cong-Jun Li and Robert W. Li
Genetics & Epigenetics 2014:6 1-7
Original Research | Published on 17 Mar 2014

INsPeCT: INtegrative Platform for Cancer Transcriptomics
Piyush B. Madhamshettiwar, Stefan R. Maetschke, Melissa J. Davis, Antonio Reverter and Mark A. Ragan
Cancer Informatics 2014:13 59-66
Original Research | Published on 12 Mar 2014

Phylogenetic Relationships of Some Filamentous Cyanoprokaryotic Species
Plamen Stoyanov, Dzhemal Moten, Rumen Mladenov, Balik Dzhambazov and Ivanka Teneva
Evolutionary Bioinformatics 2014:10 39-49
Original Research | Published on 23 Feb 2014

Postpartal Subclinical Endometritis Alters Transcriptome Profiles in Liver and Adipose Tissue of Dairy Cows
Haji Akbar, Felipe C. Cardoso, Susanne Meier, Christopher Burke, Scott McDougall, Murray Mitchell, Caroline Walker, Sandra L. Rodriguez-Zas, Robin E. Everts, Harris A. Lewin, John R. Roche and Juan J. Loor
Bioinformatics and Biology Insights 2014:8 45-63
Original Research | Published on 19 Feb 2014

The Stochastic Evolutionary Game for a Population of Biological Networks Under Natural Selection
Bor-Sen Chen and Shih-Ju Ho
Evolutionary Bioinformatics 2014:10 17-38
Original Research | Published on 16 Feb 2014

A New Method for Predicting Patient Survivorship Using Efficient Bayesian Network Learning
Xia Jiang, Diyang Xue, Adam Brufsky, Seema Khan and Richard Neapolitan
Cancer Informatics 2014:13 47-57
Original Research | Published on 13 Feb 2014

Evaluating Gene Set Enrichment Analysis Via a Hybrid Data Model
Jianping Hua, Michael L. Bittner and Edward R. Dougherty
Cancer Informatics 2014:13(S1)1-16
Original Research | Published on 12 Feb 2014

Netmes: Assessing Gene Network Inference Algorithms by Network-Based Measures
Gökmen Altay, Zeyneb Kurt, Matthias Dehmer and Frank Emmert-Streib
Evolutionary Bioinformatics 2014:10 1-9
Original Research | Published on 06 Feb 2014

RapidMic: Rapid Computation of the Maximal Information Coefficient
Dongming Tang, Mingwen Wang, Weifan Zheng and Hongjun Wang
Evolutionary Bioinformatics 2014:10 11-16
Short Report | Published on 06 Feb 2014

Longitudinal Analysis of Whole Blood Transcriptomes to Explore Molecular Signatures Associated With Acute Renal Allograft Rejection
Heesun Shin, Oliver Günther, Zsuzsanna Hollander, Janet E. Wilson-McManus, Raymond T. Ng, Robert Balshaw, Paul A. Keown, Robert McMaster, Bruce M. McManus, Nicole M. Isbel, Greg Knoll and Scott J. Tebbutt; for the PROOF Centre of Excellence Team
Bioinformatics and Biology Insights 2014:8 17-33
Original Research | Published on 22 Jan 2014

Prognostic features of signal transducer and activator of transcription 3 in an ER(+) breast cancer model system
Li-Yu D. Liu, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Yi-Shing Lin, Meei-Huey Jeng, Don A. Roth, King-Jen Chang and Fon-Jou Hsieh
Cancer Informatics 2014:13 21-45
Original Research | Published on 21 Jan 2014

OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data
Ying Hu, Chunhua Yan, Chih-Hao Hsu, Qing-Rong Chen, Kelvin Niu, George A. Komatsoulis and Daoud Meerzaman
Cancer Informatics 2014:13 13-20
Technical Advance | Published on 16 Jan 2014

GeneSV – an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences
Adam Zemla, Tanya Kostova, Rodion Gorchakov, Evgeniya Volkova, David W. C. Beasley, Jane Cardosa, Scott C. Weaver, Nikos Vasilakis and Pejman Naraghi-Arani
Bioinformatics and Biology Insights 2014:8 1-16
Original Research | Published on 08 Jan 2014

stepwiseCM: An R Package for Stepwise Classification of Cancer Samples Using Multiple Heterogeneous Data Sets
Askar Obulkasim and Mark A van de Wiel
Cancer Informatics 2014:13 1-11
Software or database review | Published on 02 Jan 2014

Approximate Likelihood Estimation of Divergence Time Range Using a Coalescent-based Model
Arindam RoyChoudhury
Evolutionary Bioinformatics 2013:9 499-509
Original Research | Published on 10 Dec 2013

A Comprehensive Phylogenetic Analysis of Deadenylases
Athanasia Pavlopoulou, Dimitrios Vlachakis, Nikolaos A.A. Balatsos and Sophia Kossida
Evolutionary Bioinformatics 2013:9 491-497
Original Research | Published on 02 Dec 2013

Are the Somatic Mutation and Tissue Organization Field Theories of Carcinogenesis Incompatible?
Simon Rosenfeld
Cancer Informatics 2013:12 221-229
Debate | Published on 01 Dec 2013

ChIP-Seq Data Mining: Remarkable Differences in NRSF/REST Target Genes between Human ESC and ESC-Derived Neurons
Jun-ichi Satoh, Natsuki Kawana and Yoji Yamamoto
Bioinformatics and Biology Insights 2013:7 357-368
Original Research | Published on 01 Dec 2013

EASER: Ensembl Easy Sequence Retriever
Emanuel Maldonado, Imran Khan, Siby Philip, Vítor Vasconcelos and Agostinho Antunes
Evolutionary Bioinformatics 2013:9 487-490
Technical Advance | Published on 24 Nov 2013

A Computational Assay to Design an Epitope-Based Peptide Vaccine Against Saint Louis Encephalitis Virus
Md. Anayet Hasan, Mehjabeen Hossain and Md. Jibran Alam
Bioinformatics and Biology Insights 2013:7 347-355
Original Research | Published on 24 Nov 2013

Computational Identification of MicroRNAs from the Expressed Sequence Tags of Toxic Dinofiagellate Alexandrium Tamarense
Dahai Gao, Limei Qiu, Zhanhui Hou, Qingchun Zhang, Jianmin Wu, Qiang Gao and Linsheng Song
Evolutionary Bioinformatics 2013:9 479-485
Original Research | Published on 20 Nov 2013

Use of GIS Mapping as a Public Health Tool—From Cholera to Cancer
George J. Musa, Po-Huang Chiang, Tyler Sylk, Rachel Bavley, William Keating, Bereketab Lakew, Hui-Chen Tsou and Christina W. Hoven
Health Services Insights 2013:6 111-116
Review | Published on 19 Nov 2013

Grouped False-Discovery Rate for Removing the Gene-Set-Level Bias of RNA-seq
Tae Young Yang and Seongmun Jeong
Evolutionary Bioinformatics 2013:9 467-478
Methodology | Published on 13 Nov 2013

The Origin of Parasitism Gene in Nematodes: Evolutionary Analysis Through the Construction of Domain Trees
Yizi Yang and Damin Luo
Evolutionary Bioinformatics 2013:9 453-466
Original Research | Published on 06 Nov 2013

Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases
Jun-ichi Satoh, Natsuki Kawana and Yoji Yamamoto
Gene Regulation and Systems Biology 2013:7 139-152
Original Research | Published on 04 Nov 2013

On Crowd-verification of Biological Networks
The sbv IMPROVER project team (in alphabetical order): Sam Ansari, Jean Binder, Stephanie Boue, Anselmo Di Fabio, William Hayes, Julia Hoeng, Anita Iskandar, Robin Kleiman, Raquel Norel, Bruce O'Neel, Manuel C. Peitsch, Carine Poussin, Dexter Pratt, Kahn Rhrissorrakrai, Walter K. Schlage, Gustavo Stolovitzky and Marja Talikka
Bioinformatics and Biology Insights 2013:7 307-325
Original Research | Published on 10 Oct 2013

Automatic Identification of Algal Community from Microscopic Images
Natchimuthu Santhi, Chinnaraj Pradeepa, Parthasarathy Subashini and Senthil Kalaiselvi
Bioinformatics and Biology Insights 2013:7 327-334
Original Research | Published on 10 Oct 2013

Human Retrovirus Codon Usage from tRNA Point of View: Therapeutic Insights
Diego Frias, Joana P. Monteiro-Cunha, Aline C. Mota-Miranda, Vagner S. Fonseca, Tulio de Oliveira, Bernardo Galvao-Castro, and Luiz C. J. Alcantara
Bioinformatics and Biology Insights 2013:7 335-345
Original Research | Published on 10 Oct 2013

Analysis of New Functional Profiles of Protein Isoforms Yielded by Ds Exonization in Rice
Ting-Ying Chien, Li-yu Daisy Liu, and Yuh-Chyang Charng
Evolutionary Bioinformatics 2013:9 417-427
Original Research | Published on 09 Oct 2013 | Video abstract